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Sample GSM128565 Query DataSets for GSM128565
Status Public on Apr 30, 2007
Title 1590_p_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13846.1387 125.3929 G 145.7739 13927.1387 8256.0000 13746.8223 197 15.8375558853149 95.539328934707 82.3160 81.0000 9.6929 220 125.3929
1002 1 829.6838 7.5138 G 9.4157 910.6838 1045.0000 438.2209 119 12.3091630935669 96.7197597667676 82.3729 81.0000 10.4798 122 7.5138
1003 1 16.3000 0.1476 G 1.0122 98.3000 97.0000 16.8570 40 7.13649654388428 97.1152664668695 84.3077 82.0000 10.0768 188 0.1476
1004 1 10.8333 0.0981 L 0.9691 95.8333 93.0000 19.3041 90 10.7047443389893 98.8923333890794 84.4167 85.0000 9.2616 186 0.0981
1005 1 26.5273 0.2402 G 1.1221 109.5273 104.0000 24.6332 55 8.36828422546387 97.6126877818055 83.2747 83.0000 9.7418 188 0.2402
1006 1 31.5857 0.2860 G 1.1872 112.5857 111.0000 13.0302 70 9.44069766998291 94.8317100088171 82.5843 81.0000 9.2211 184 0.2860
1007 1 87.5732 0.7931 G 1.6280 173.5732 171.0000 26.2219 82 10.2179079055786 106.619132152718 88.2692 86.0000 13.7461 188 0.7931
1008 1 13962.2158 126.4441 G 133.5358 14052.2158 9664.0000 13699.1963 197 15.8375558853149 105.231802348515 89.9193 90.0000 10.1545 231 126.4441
1009 1 1074.8898 9.7344 G 11.4313 1161.8898 1311.0000 561.4538 120 12.3607740402222 101.641069698811 86.0583 87.0000 9.7607 124 9.7344
1010 1 470.7010 4.2627 G 5.5829 555.7010 600.0000 202.3011 97 11.1132459640503 99.5366021500748 85.5414 85.0000 9.6911 187 4.2627
1011 1 238.2700 2.1578 G 3.1028 325.2700 326.0000 84.5964 102 11.396071434021 104.83195812012 88.0165 87.0000 11.8880 188 2.1578
1012 1 38.3768 0.3475 G 1.1517 123.3768 122.0000 16.8902 69 9.37302112579346 107.126085379608 86.8077 85.0000 14.7507 188 0.3475
1013 1 25.7013 0.2328 G 1.1061 108.7013 108.0000 12.1901 77 9.90148735046387 98.2735978283197 84.2967 83.0000 10.1824 188 0.2328
1014 1 15.1176 0.1369 G 1.0202 96.1176 95.0000 11.5413 51 8.0582389831543 94.2111642391383 82.2514 81.0000 8.8074 181 0.1369
1015 1 13281.3877 120.2784 G 136.6030 13365.3877 8085.0000 13279.2529 213 16.4681510925293 97.841079771092 83.7277 84.0000 9.2274 232 120.2784
1016 1 64.9425 0.5881 G 1.5271 147.9425 148.0000 24.4768 87 10.5248203277588 96.8797359193494 83.0055 83.0000 9.2532 188 0.5881
1017 1 44.0000 0.3985 G 1.3166 127.0000 127.0000 19.7472 84 10.3417663574219 96.4629759763683 82.4190 83.0000 8.9753 185 0.3985
1018 1 11.4091 0.1033 L 0.9729 94.4091 92.0000 15.3746 44 7.48482084274292 97.0384391085231 82.5220 83.0000 9.3590 188 0.1033
1019 1 21.6429 0.1960 G 1.0557 103.6429 101.0000 19.7807 42 7.3127326965332 98.1785237503407 82.3297 82.0000 10.7857 188 0.1960
1020 1 57.8000 0.5234 G 1.4238 140.8000 142.0000 21.1553 85 10.4031419754028 98.889460063844 84.1086 83.0000 10.5930 181 0.5234

Total number of rows: 54359

Table truncated, full table size 6985 Kbytes.




Supplementary file Size Download File type/resource
GSM128565.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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