NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM128587 Query DataSets for GSM128587
Status Public on Apr 30, 2007
Title 2315_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6261.4268 132.2903 G 63.7587 6347.4268 4260.0000 6077.9438 152 13.9115924835205 99.5539677399978 84.8667 86.0000 9.0360 124 132.2903
1002 1 236.7529 5.0021 G 3.2912 319.7529 354.0000 104.3482 85 10.4031419754028 97.1552437706383 83.6429 83.0000 9.4368 188 5.0021
1003 1 21.8868 0.4624 G 1.0814 105.8868 107.0000 11.0993 53 8.21472454071045 97.9175732957409 84.0714 84.0000 9.2784 188 0.4624
1004 1 26.1538 0.5526 G 1.1264 111.1538 108.0000 12.4459 52 8.1368579864502 98.6775156692745 84.5989 85.0000 9.1183 183 0.5526
1005 1 23.4808 0.4961 G 1.1002 108.4808 108.0000 13.0877 52 8.1368579864502 98.6000805267786 85.4807 85.0000 9.0667 187 0.4961
1006 1 27.0612 0.5717 G 1.1132 112.0612 108.0000 11.7480 49 7.89865398406982 100.664821218951 85.9890 85.0000 10.4432 187 0.5717
1007 1 28.8793 0.6102 G 1.1418 113.8793 114.0000 11.4757 58 8.59348011016846 99.739179587946 84.7901 85.0000 9.8261 187 0.6102
1008 1 6240.9106 131.8569 G 64.8462 6324.9106 4433.0000 6162.8203 159 14.2283201217651 97.5371412825998 83.9091 84.0000 9.0248 114 131.8569
1009 1 268.9588 5.6825 G 2.7715 356.9588 357.0000 84.0018 97 11.1132459640503 128.79739520521 94.3609 88.0000 27.1983 175 5.6825
1010 1 151.8442 3.2081 G 2.4095 235.8442 252.0000 65.4870 77 9.90148735046387 97.8798656836219 83.4670 84.0000 9.2532 188 3.2081
1011 1 47.5325 1.0043 G 1.3558 130.5325 129.0000 18.4740 77 9.90148735046387 96.2783939675305 82.9890 83.0000 8.8523 188 1.0043
1012 1 31.3500 0.6624 G 1.1728 114.3500 113.0000 13.2575 60 8.74038791656494 97.5014707492227 82.9396 83.0000 9.6676 188 0.6624
1013 1 18.4231 0.3892 G 1.0425 101.4231 101.0000 13.8277 52 8.1368579864502 97.2875126769586 82.8736 83.0000 9.5250 188 0.3892
1014 1 17.2128 0.3637 G 1.0366 99.2128 98.0000 11.0895 47 7.73577785491943 95.7134121391068 82.0824 82.0000 9.1423 188 0.3637
1015 1 6213.0308 131.2678 G 66.4722 6295.0308 3633.0000 6198.1328 165 14.4942932128906 94.7016541123142 81.8833 82.0000 8.4678 124 131.2678
1016 1 52.5857 1.1110 G 1.4117 133.5857 132.0000 19.9932 70 9.44069766998291 94.627882287651 81.5801 81.0000 9.0853 187 1.1110
1017 1 32.0000 0.6761 G 1.2068 113.0000 110.0000 15.5112 67 9.23618125915527 93.639569245973 80.5659 81.0000 8.4264 188 0.6761
1018 1 17.0200 0.3596 G 1.0344 98.0200 99.0000 11.5853 50 7.97884559631348 94.7616652026508 80.8187 81.0000 9.1744 188 0.3596
1019 1 19.2182 0.4060 G 1.0608 101.2182 101.0000 12.2262 55 8.36828422546387 95.4168453925799 82.0165 82.0000 8.9446 188 0.4060
1020 1 23.0161 0.4863 G 1.1140 107.0161 107.0000 12.2046 62 8.88486671447754 96.0641337601013 83.4396 84.0000 8.0428 188 0.4863

Total number of rows: 54359

Table truncated, full table size 6923 Kbytes.




Supplementary file Size Download File type/resource
GSM128587.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap