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Sample GSM128590 Query DataSets for GSM128590
Status Public on Sep 28, 2010
Title 2513_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, radiotherapy alone
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 6361.2949 134.9142 G 61.2164 6453.2949 4759.0000 5770.8765 141 13.3987598419189 105.417713157743 90.9667 92.0000 8.9451 124
1002 1 245.5529 5.2078 G 3.2223 336.5529 364.0000 100.4366 85 10.4031419754028 104.444549707418 90.4560 91.0000 8.9630 188
1003 1 27.7936 0.5895 G 1.1322 119.7936 119.0000 12.8139 63 8.95623207092285 105.804857853887 90.7363 92.0000 9.2032 188
1004 1 37.2143 0.7893 G 1.1876 128.2143 129.0000 17.2862 56 8.444016456604 107.961920899078 91.0500 91.0000 11.3079 186
1005 1 26.1290 0.5542 G 1.1161 115.1290 114.0000 13.2768 62 8.88486671447754 103.149057645825 88.9604 89.0000 9.4327 183
1006 1 33.8551 0.7180 G 1.2178 122.8551 123.0000 14.8649 69 9.37302112579346 100.886391497915 89.2079 89.0000 7.9243 184
1007 1 38.9726 0.8266 G 1.2204 127.9726 125.0000 29.0134 73 9.64087581634521 104.857069739184 89.2928 89.0000 10.5714 187
1008 1 6525.1738 138.3898 G 63.5728 6614.1738 4941.0000 6097.0195 146 13.6342573165894 104.040939853928 90.4417 89.0000 10.0273 124
1009 1 266.3333 5.6486 G 3.3870 353.3333 378.0000 111.1771 87 10.5248203277588 104.32058084389 89.1469 87.0000 11.5470 183
1010 1 288.2976 6.1144 G 3.6204 377.2976 420.0000 135.2442 84 10.3417663574219 104.213314957556 88.8791 89.0000 10.1422 188
1011 1 40.9702 0.8689 G 1.2521 128.9702 127.0000 16.1716 67 9.23618125915527 103.0022058435 88.1209 88.0000 10.0015 188
1012 1 38.6143 0.8190 G 1.2257 129.6143 127.0000 21.4897 70 9.44069766998291 105.749035717127 91.5879 91.0000 9.8327 188
1013 1 29.8116 0.6323 G 1.1322 118.8116 117.0000 13.5039 69 9.37302112579346 104.935945059456 90.4862 89.0000 10.6240 187
1014 1 87.1111 1.8475 G 1.7293 174.1111 178.0000 30.5048 81 10.1554126739502 100.68388167811 87.9396 87.0000 9.1226 188
1015 1 6482.8184 137.4915 G 63.5645 6572.8184 4261.0000 6178.7104 156 14.093451499939 103.403913796589 90.3750 90.0000 8.9359 124
1016 1 41.3158 0.8763 G 1.2378 131.3158 130.0000 15.6484 76 9.83698177337646 106.092040771532 91.3536 90.0000 10.7280 187
1017 1 31.0152 0.6578 G 1.1136 122.0152 119.0000 15.7523 66 9.16699600219727 109.571076173586 91.7582 91.0000 12.3807 188
1018 1 27.2419 0.5778 G 1.1125 116.2419 116.0000 14.3287 62 8.88486671447754 104.482995267391 89.9835 89.0000 10.3220 188
1019 1 22.5278 0.4778 G 1.0830 110.5278 109.0000 12.8808 72 9.57461452484131 102.054353159711 88.2912 88.0000 9.3696 188
1020 1 28.3750 0.6018 G 1.1344 116.3750 116.0000 12.9823 72 9.57461452484131 102.587410035956 88.9505 88.0000 9.7249 188

Total number of rows: 54359

Table truncated, full table size 6559 Kbytes.




Supplementary file Size Download File type/resource
GSM128590.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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