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Sample GSM128603 Query DataSets for GSM128603
Status Public on Apr 30, 2007
Title 2900_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 7428.9663 170.7943 G 69.6787 7520.9663 6884.0000 6399.3843 120 12.3607740402222 107.937805262212 92.1978 92.0000 10.6252 188 170.7943
1002 1 182.5875 4.1977 G 2.5878 269.5875 298.0000 78.1122 80 10.0925302505493 104.175796095015 89.1978 87.0000 11.4505 188 4.1977
1003 1 32.2321 0.7410 G 1.1690 119.2321 118.0000 11.7108 56 8.444016456604 101.991884837335 87.2308 87.0000 9.9946 188 0.7410
1004 1 30.9492 0.7115 G 1.1603 117.9492 118.0000 12.1995 59 8.66724491119385 101.652443963354 87.2527 87.0000 9.7683 188 0.7115
1005 1 26.9600 0.6198 G 1.1279 113.9600 114.0000 12.1753 50 7.97884559631348 101.037089866938 86.6319 87.0000 9.3581 188 0.6198
1006 1 27.4603 0.6313 G 1.1411 112.4603 110.0000 11.3471 63 8.95623207092285 98.5536230712199 86.1209 85.0000 9.0357 188 0.6313
1007 1 29.0308 0.6674 G 1.1462 116.0308 114.0000 13.8852 65 9.09728336334229 101.233186594248 86.6923 87.0000 9.4888 188 0.6674
1008 1 6794.4810 156.2073 G 67.2029 6882.4810 4350.0000 6449.6318 133 13.0131034851074 102.413527432641 86.5083 88.0000 9.6090 124 156.2073
1009 1 219.0617 5.0363 G 2.9735 307.0617 319.0000 104.8562 81 10.1554126739502 103.26674986313 87.1648 88.0000 10.1778 188 5.0363
1010 1 116.9552 2.6888 G 2.0282 201.9552 214.0000 50.1545 67 9.23618125915527 99.5728590483573 85.3297 85.0000 9.7152 188 2.6888
1011 1 32.1818 0.7399 G 1.1872 118.1818 118.0000 13.4884 66 9.16699600219727 99.5427240188643 85.4835 86.0000 9.0285 188 0.7399
1012 1 34.1053 0.7841 G 1.2056 119.1053 119.0000 14.5719 57 8.51907634735107 98.7947841025737 84.7637 85.0000 9.1965 188 0.7841
1013 1 34.7288 0.7984 G 1.1981 120.7288 117.0000 20.9752 59 8.66724491119385 100.76366602051 86.1044 86.0000 9.8424 188 0.7984
1014 1 32.0755 0.7374 G 1.2030 117.0755 114.0000 14.9891 53 8.21472454071045 97.320088581971 84.8462 85.0000 8.2134 188 0.7374
1015 1 7015.0762 161.2788 G 69.9900 7100.0762 5087.0000 6568.7935 133 13.0131034851074 101.444143658032 87.0333 85.0000 10.9628 124 161.2788
1016 1 35.5893 0.8182 G 1.2220 119.5893 117.0000 21.5637 56 8.444016456604 97.8613775348599 85.2692 84.0000 9.2409 188 0.8182
1017 1 27.0727 0.6224 G 1.1168 111.0727 111.0000 12.7719 55 8.36828422546387 99.4545159554937 84.9560 84.0000 10.3030 188 0.6224
1018 1 29.7222 0.6833 G 1.1548 113.7222 110.0000 18.6730 54 8.29185962677002 98.4798784758694 83.5989 84.0000 9.6533 188 0.6833
1019 1 22.5882 0.5193 G 1.0786 108.5882 108.0000 14.8524 51 8.0582389831543 100.679011367315 86.9066 86.0000 9.7860 188 0.5193
1020 1 24.7547 0.5691 G 1.0899 110.7547 110.0000 11.0161 53 8.21472454071045 101.618006732476 86.7143 86.0000 10.4120 181 0.5691

Total number of rows: 54359

Table truncated, full table size 6928 Kbytes.




Supplementary file Size Download File type/resource
GSM128603.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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