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GEO accession:
Sample GSM128609
Query DataSets for GSM128609
Status
Public on Sep 28, 2010
Title
1244_p_1
Sample type
RNA
Source name
biopsy, prior to treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Sep 28, 2010
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE20167
Gene expression profiles of cervical cancers for novel molecular classification
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
15626.5029
166.9520
G
155.9896
15710.5029
7463.0000
15900.7588
179
15.0966844558716
100.715070644103
82.3417
84.0000
11.1434
124
1002
1
1278.9208
13.6639
G
14.1128
1359.9208
1560.0000
725.5542
103
11.4517974853516
96.3605344772419
79.9066
81.0000
10.2404
188
1003
1
2.0345
0.0217
L
0.8408
84.0345
84.0000
9.7891
29
6.07650756835938
99.9478593580236
82.8407
82.0000
11.9652
188
1004
1
18.4118
0.1967
G
1.0215
101.4118
103.0000
11.7876
51
8.0582389831543
99.2769225239456
83.3352
83.0000
10.8513
188
1005
1
9.8333
0.1051
L
0.9440
92.8333
97.0000
11.3228
30
6.18038702011108
98.3450609559005
83.3779
83.0000
10.2300
178
1006
1
19.8781
0.2124
G
1.0385
97.8781
95.0000
13.2705
41
7.22515201568604
94.2502313896222
79.3081
78.0000
10.8335
178
1007
1
7.3407
0.0784
L
0.9226
86.3407
87.0000
10.2381
91
10.7640514373779
93.5809864211703
79.4388
79.0000
9.7207
204
1008
1
16084.6338
171.8466
G
157.3775
16170.6338
7719.0000
16469.6738
174
14.8843431472778
102.750576382637
85.3833
86.0000
11.1671
124
1009
1
454.6022
4.8569
G
5.4888
536.6022
583.0000
226.2762
93
10.8816947937012
97.7626616717492
82.0824
82.0000
10.5084
188
1010
1
770.7333
8.2344
G
8.9113
849.7333
944.0000
399.7243
90
10.7047443389893
95.354111235799
79.2167
79.0000
10.9027
186
1011
1
76.8101
0.8206
G
1.6374
153.8101
157.0000
26.3372
79
10.0292530059814
93.934416192227
77.1978
77.0000
11.2896
188
1012
1
80.9620
0.8650
G
1.7189
158.9620
163.0000
32.7679
79
10.0292530059814
92.478206624598
78.2692
78.0000
9.6521
188
1013
1
41.8451
0.4471
G
1.3182
119.8451
119.0000
14.1627
71
9.50789165496826
90.9155563272526
77.2198
78.0000
8.6104
188
1014
1
43.7273
0.4672
G
1.3302
121.7273
124.0000
16.5338
77
9.90148735046387
91.5116630229195
78.2667
78.0000
9.0078
186
1015
1
16050.2979
171.4798
G
162.5596
16133.2979
6452.0000
17173.5195
222
16.8124713897705
99.245441570638
82.8810
83.0000
10.8303
218
1016
1
93.8571
1.0028
G
1.7775
173.8571
172.0000
29.9731
84
10.3417663574219
97.8096048501757
81.1167
80.0000
11.8731
186
1017
1
19.3281
0.2065
G
1.0496
99.3281
100.0000
14.7140
64
9.02703380584717
94.6317929546834
78.9489
80.0000
9.7545
182
1018
1
14.0682
0.1503
L
0.9884
90.0682
92.0000
14.8453
44
7.48482084274292
91.1256778824931
77.1160
76.0000
10.0838
187
1019
1
10.4474
0.1116
L
0.9401
88.4474
87.0000
12.1367
38
6.95579624176025
94.0862596765866
79.0549
78.0000
10.7242
188
1020
1
30.5676
0.3266
G
1.1482
108.5676
106.0000
14.7987
74
9.70668506622314
94.5551342057196
79.6471
78.0000
11.0368
159
Total number of rows:
54359
Table truncated, full table size
6603 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128609.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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