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Sample GSM128931 Query DataSets for GSM128931
Status Public on Sep 28, 2010
Title 2036_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Sep 28, 2010
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 11008.6719 88.5935 G 117.8534 11088.6719 4920.0000 11336.8027 185 15.3476161956787 94.0887061137891 79.6774 80.0000 9.3925 225
1002 1 970.0952 7.8070 G 11.4731 1048.0952 1109.0000 536.0858 107 11.6720447540283 91.3523107114468 77.6118 78.0000 8.9015 158
1003 1 8.5714 0.0690 L 0.9204 90.5714 81.0000 29.4854 35 6.67558097839355 98.405894031921 83.4539 82.0000 10.9373 145
1004 1 3.8788 0.0312 L 0.8747 88.8788 88.0000 12.0925 33 6.48204469680786 101.615554907712 84.5987 85.0000 11.0770 158
1005 1 14.6154 0.1176 G 1.0115 91.6154 90.0000 14.0960 39 7.04672574996948 90.5712478558545 77.5190 77.0000 9.0475 164
1006 1 24.4561 0.1968 G 1.1139 101.4561 103.0000 12.1382 57 8.51907634735107 91.0827518540272 78.3034 77.0000 9.3885 184
1007 1 17.9057 0.1441 G 1.0396 95.9057 95.0000 11.8898 53 8.21472454071045 92.2558065317727 77.8022 78.0000 9.5039 188
1008 1 15994.6436 128.7187 C 87.0245 16074.6436 20444.0000 11009.3066 131 12.9148902893066 184.714021177798 95.0948 80.0000 69.8093 120
1009 1 189.0444 1.5214 G 2.8451 268.0444 280.0000 77.9099 90 10.7047443389893 94.2137737697574 80.3898 79.0000 10.1425 183
1010 1 515.6848 4.1500 G 6.3734 594.6848 665.0000 267.8215 92 10.8230323791504 93.3079473310282 78.2418 79.0000 9.5386 188
1011 1 199.7938 1.6079 G 3.0496 276.7938 281.0000 84.8954 97 11.1132459640503 90.7634265802113 78.0769 77.0000 9.1756 188
1012 1 64.9200 0.5225 G 1.5636 140.9200 140.0000 25.8600 75 9.77204990386963 90.1259309854889 76.9615 76.0000 9.4173 188
1013 1 18.0517 0.1453 G 1.0490 96.0517 97.0000 11.8822 58 8.59348011016846 91.5640808560069 77.8571 78.0000 9.0427 188
1014 1 15.6522 0.1260 G 1.0145 94.6522 96.0000 12.8862 46 7.65303993225098 93.3025896991591 78.9835 79.0000 9.5351 188
1015 1 11475.3643 92.3493 G 124.7764 11554.3643 5424.0000 11548.2822 183 15.2644300460815 92.600576629736 79.4484 79.0000 9.0671 231
1016 1 100.4458 0.8083 G 1.9289 178.4458 182.0000 39.9470 83 10.2800235748291 92.5130150990513 78.5706 78.0000 9.6753 183
1017 1 51.9744 0.4183 G 1.3904 130.9744 130.0000 21.3709 78 9.96557521820068 94.1977102094732 78.9231 79.0000 10.1318 188
1018 1 11.2076 0.0902 L 0.9654 89.2076 87.0000 13.7008 53 8.21472454071045 92.400637483218 79.3814 78.0000 9.6004 122
1019 1 12.7073 0.1023 L 0.9779 90.7073 93.0000 10.7686 41 7.22515201568604 92.7559513756266 78.1788 78.0000 9.8373 185
1020 1 29.1613 0.2347 G 1.1487 111.1613 108.0000 23.8498 62 8.88486671447754 96.7732758422077 82.6548 82.0000 9.8489 174

Total number of rows: 54359

Table truncated, full table size 6581 Kbytes.




Supplementary file Size Download File type/resource
GSM128931.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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