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GEO accession:
Sample GSM128933
Query DataSets for GSM128933
Status
Public on Mar 23, 2015
Title
2036_d_2
Sample type
RNA
Source name
biopsy, during treatment, carbon-ion radiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
during treatment, carbon-ion radiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
10458.5342
96.4849
G
114.8380
10537.5342
4092.0000
11048.7246
191
15.5945100784302
91.7600264309671
79.5630
79.0000
8.5067
123
1002
1
887.1273
8.1842
G
10.0933
969.1273
1072.0000
524.1617
112
11.9416427612305
96.0171707802317
81.6583
82.0000
9.3448
124
1003
1
5.2857
0.0488
L
0.8869
90.2857
89.0000
14.6416
35
6.67558097839355
101.797375534107
85.8041
85.0000
11.1982
154
1004
1
5.5897
0.0516
L
0.9267
86.5897
86.0000
10.7768
39
7.04672574996948
93.4385692966696
80.8497
81.0000
8.2924
179
1005
1
6.0000
0.0554
L
0.7528
87.0000
85.0000
12.3400
29
6.07650756835938
115.567210032847
83.9474
81.0000
23.0448
158
1006
1
16.6667
0.1538
G
1.0144
97.6667
97.0000
14.0846
39
7.04672574996948
96.276641737138
81.5722
81.0000
10.1844
186
1007
1
25.4000
0.2343
G
1.1058
106.4000
101.0000
24.2800
50
7.97884559631348
96.2221185367002
81.0000
81.0000
10.1481
187
1008
1
11552.5928
106.5781
G
119.5093
11635.5928
7432.0000
11243.7744
179
15.0966844558716
97.3613812684951
83.1833
83.0000
9.5743
124
1009
1
161.1163
1.4864
G
2.5297
242.1163
247.0000
58.6635
86
10.4641580581665
95.7076475133108
81.7967
81.0000
9.8051
188
1010
1
452.0110
4.1700
G
5.7610
530.0110
566.0000
234.2679
91
10.7640514373779
91.9996768669871
78.5581
78.0000
9.3331
178
1011
1
160.8876
1.4843
G
2.5912
238.8876
235.0000
64.2382
89
10.6451082229614
92.1912871427057
79.3867
78.0000
9.4609
187
1012
1
48.0145
0.4430
G
1.3403
128.0145
128.0000
20.8233
69
9.37302112579346
95.5093786751662
81.6154
80.0000
10.3396
188
1013
1
21.1129
0.1948
G
1.0700
102.1129
102.0000
11.6717
62
8.88486671447754
95.4333349339436
80.8022
81.0000
9.6222
188
1014
1
10.1892
0.0940
L
0.9434
91.1892
91.0000
11.5099
37
6.86366271972656
96.6568564328209
81.6593
81.0000
10.4379
188
1015
1
10732.2871
99.0104
G
109.5910
10816.2871
4268.0000
11461.0625
190
15.5536336898804
98.6968800724685
84.1389
84.0000
9.7979
224
1016
1
66.3718
0.6123
G
1.5401
146.3718
145.0000
22.2780
78
9.96557521820068
95.0395382331048
81.8035
80.0000
10.0264
179
1017
1
29.6806
0.2738
G
1.1731
110.6806
110.0000
14.8369
72
9.57461452484131
94.3471534866006
80.2088
81.0000
8.8981
188
1018
1
4.4419
0.0410
L
0.8916
86.4419
87.0000
9.9832
86
10.4641580581665
96.9460859520629
82.1744
82.0000
9.9641
203
1019
1
10.4694
0.0966
L
0.9622
94.4694
95.0000
11.6787
100
11.2837915420532
98.1790444776581
84.5466
84.0000
9.4527
167
1020
1
24.2778
0.2240
G
1.0819
108.2778
107.0000
22.1923
54
8.29185962677002
100.079413463796
83.0946
84.0000
10.7196
154
Total number of rows:
54359
Table truncated, full table size
6562 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128933.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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