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Sample GSM128937 Query DataSets for GSM128937
Status Public on Mar 23, 2015
Title 2038_d_2
Sample type RNA
 
Source name biopsy, during treatment, carbon-ion radiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, carbon-ion radiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 19712.4316 269.8834 G 165.8527 19816.4316 5450.0000 23311.2109 171 14.7554721832275 119.482122619976 104.2083 104.0000 10.3214 124
1002 1 653.8111 8.9513 G 6.1397 758.8111 863.0000 333.2102 90 10.7047443389893 123.59076504095 105.6407 105.0000 12.3938 173
1003 1 2.4333 0.0333 L 0.8696 109.4333 110.0000 11.0896 30 6.18038702011108 125.8435857073 106.6707 107.0000 12.5624 173
1004 1 11.0286 0.1510 L 0.9361 115.0286 115.0000 15.4670 35 6.67558097839355 122.882138962332 103.8667 104.0000 12.5881 186
1005 1 11.2500 0.1540 L 0.9541 114.2500 115.0000 14.1558 40 7.13649654388428 119.74181554196 102.9011 103.0000 11.1612 188
1006 1 30.0000 0.4107 G 1.0984 135.0000 133.0000 14.6828 48 7.81764030456543 122.908086418185 104.8187 105.0000 11.9387 188
1007 1 20.7674 0.2843 G 1.0235 124.7674 126.0000 13.5215 43 7.3992772102356 121.905442738723 104.2418 104.0000 11.9370 188
1008 1 22899.2676 313.5145 G 187.2838 23002.2676 9681.0000 24518.2695 178 15.0544557571411 122.820411692261 104.5250 103.0000 13.2136 124
1009 1 558.0833 7.6407 G 5.2482 666.0833 736.0000 258.8013 96 11.0558128356934 126.917173448425 107.6593 108.0000 12.6115 188
1010 1 684.9775 9.3780 G 6.5930 787.9775 882.0000 351.6535 89 10.6451082229614 119.518050204695 103.9834 103.0000 11.0120 187
1011 1 90.2152 1.2351 G 1.5752 194.2152 190.0000 29.6544 79 10.0292530059814 123.294162875769 103.9286 104.0000 12.8628 188
1012 1 68.7424 0.9412 G 1.3985 175.7424 176.0000 24.4908 66 9.16699600219727 125.662628002712 106.8564 107.0000 12.4417 187
1013 1 53.3378 0.7302 G 1.2945 158.3378 159.0000 17.5632 74 9.70668506622314 122.313140856697 106.2376 105.0000 11.5421 187
1014 1 93.7162 1.2831 G 1.5812 202.7162 207.0000 27.9916 74 9.70668506622314 128.201587416468 109.8901 109.0000 12.8011 188
1015 1 20025.2285 274.1659 G 154.1291 20137.2285 7071.0000 22647.0410 147 13.6808700561523 130.651706305631 110.5250 112.0000 12.4345 124
1016 1 132.0135 1.8074 G 1.8825 240.0135 252.0000 53.8721 74 9.70668506622314 127.498291667464 108.0879 108.0000 12.9989 188
1017 1 8.6905 0.1190 L 0.9096 120.6905 122.0000 19.1721 84 10.3417663574219 132.688120526687 111.6404 112.0000 13.7921 236
1018 1 9.0000 0.1232 L 0.9274 118.0000 115.0000 19.5229 91 10.7640514373779 127.242869150972 110.0584 109.0000 12.1619 160
1019 1 11.8387 0.1621 L 0.9591 119.8387 124.0000 16.1247 62 8.88486671447754 124.952666194838 107.9126 108.0000 11.3018 107
1020 1 22.2045 0.3040 G 1.0331 133.2045 133.0000 14.5596 44 7.48482084274292 128.933091913752 111.3278 111.0000 11.9554 186

Total number of rows: 54359

Table truncated, full table size 6736 Kbytes.




Supplementary file Size Download File type/resource
GSM128937.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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