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Sample GSM129630 Query DataSets for GSM129630
Status Public on Aug 13, 2007
Title TG1 with pBS(Kan) on hydrogen production
Sample type RNA
 
Source name Channel 1
Organism Escherichia coli
Characteristics RNA extracted from hydrogen producing cells of TG1 with pBS(Kan) after 6-hour cultivation in complex medium with fructose
Extracted molecule total RNA
Label biotin
 
Description RNA extracted from hydrogen producing cells of TG1 with pBS(Kan) after 6-hour cultivation in complex medium with fructose
Data processing MAS 5.0 Expression Analysis Default Setting
 
Submission date Aug 21, 2006
Last update date Aug 13, 2007
Contact name Toshinari Maeda
E-mail(s) toshinari.maeda@chemail.tamu.edu
Phone 979-845-1744
Organization name Texas A&M University
Department Department of Chemical Engineering
Lab Bioremediation
Street address 220 Jack E. Brown Building
City College Station
State/province TX
ZIP/Postal code 77843-3122
Country USA
 
Platform ID GPL199
Series (1)
GSE5905 E. coli TG1/pBS(Kan)Synhox and pBS(Kan) hydrogen production

Data table header descriptions
ID_REF
(TG1-pBS(Kan)) Stat Pairs Number of perfect match probes for the probeset
(TG1-pBS(Kan)) Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF (TG1-pBS(Kan)) Stat Pairs (TG1-pBS(Kan)) Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2 2 619.9 A 0.125
AFFX-BioC-3_at 1 1 153.3 A 0.25
AFFX-CreX-5_at 20 20 4.9 A 0.953518
AFFX-CreX-3_at 20 20 7.8 A 0.997725
AFFX-DapX-5_at 20 20 75.2 A 0.0727
AFFX-DapX-M_at 20 20 21.3 A 0.645547
AFFX-DapX-3_at 20 20 43.8 A 0.382599
AFFX-LysX-5_at 20 20 12.3 A 0.455413
AFFX-LysX-M_at 20 20 11.2 A 0.916426
AFFX-LysX-3_at 20 20 24.3 A 0.368438
AFFX-PheX-5_at 20 20 27 A 0.440646
AFFX-PheX-M_at 20 20 5.8 A 0.916408
AFFX-PheX-3_at 20 20 39.4 A 0.327079
AFFX-ThrX-5_at 20 20 48 P 0.009337
AFFX-ThrX-M_at 20 20 24 A 0.425962
AFFX-ThrX-3_at 20 20 130.9 M 0.058444
AFFX-TrpnX-5_at 20 20 12.9 A 0.617401
AFFX-TrpnX-M_at 20 20 24.9 A 0.52976
AFFX-TrpnX-3_at 20 20 13.3 A 0.686277
AFFX-HXB2_5_at 20 20 2.2 A 0.993129

Total number of rows: 7312

Table truncated, full table size 302 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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