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Platform GPL199 Query DataSets for GPL199
Status Public on Jul 18, 2002
Title [Ecoli_ASv2] Affymetrix E. coli Antisense Genome Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Escherichia coli K-12
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Has 7312 entries and was indexed 20-May-2002.
The GeneChip E. coli Antisense Genome Array can be used for examining expression of all known E. coli genes and discovering novel, uncharacterized intergenic transcripts. The array contains probe sets to detect the antisense strand of more than 4,200 known open reading frames. In addition, over 1,350 intergenic sequences can be interrogated in both directions permitting functional characterization of potentially important shorter expressed sequences.
Sequence information for probes on the array correspond to the M49 version of the E. coli Genome Project database at the University of Wisconsin.


Keywords = high density oligonucleotide array
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=ecoliantisense
http://www.affymetrix.com/analysis/index.affx
Submission date Jul 01, 2002
Last update date Jul 08, 2010
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (947) GSM18235, GSM18236, GSM18237, GSM18246, GSM18247, GSM18248 
Series (54)
GSE1106 aerobic knock-out
GSE1107 anaerobic knock-out
GSE1121 changes of global gene expression in E. coli during an oxygen shift
Relations
Alternative to GPL10659 (Alternative CDF)

Data table header descriptions
ID Affymetrix Probe Set ID
ORF Locus tag
SPOT_ID
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description GenBank description associated with the representative public identifier. Blank for some probe sets.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID ORF SPOT_ID Species Scientific Name Annotation Date Sequence Type Representative Public ID Sequence Source Target Description Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
aas_b2836_at b2836 Escherichia coli Mar 11, 2009 Exemplar sequence 2970885 /start=2971885 /end=2974036 /direction=- /description=2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase /// fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase /// bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase aas /// aas /// ECs3693 1039306 916493 947315 958304 0008152 // metabolic process // inferred from electronic annotation /// 8152 // metabolic process // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation /// 5886 // plasma membrane // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0008779 // acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity // inferred from electronic annotation /// 0008922 // long-chain-fatty-acid-[acyl-carrier-protein] ligase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 8415 // acyltransferase activity // inferred from electronic annotation /// 8779 // acyl-[acyl-carrier-protein]-phospholipid O-acyltransferase activity // inferred from electronic annotation /// 8922 // long-chain-fatty-acid-[acyl-carrier-protein] ligase activity // inferred from electronic annotation
aat_b0885_at b0885 Escherichia coli Mar 11, 2009 Exemplar sequence 924951 /start=925951 /end=926655 /direction=- /description=leucyl, phenylalanyl-tRNA-protein transferase leucyl/phenylalanyl-tRNA--protein transferase /// leucyl/phenylalanyl-tRNA-protein transferase aat /// aat 917712 945490 958840 0030163 // protein catabolic process // inferred from electronic annotation /// 30163 // protein catabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 5737 // cytoplasm // inferred from electronic annotation 0008415 // acyltransferase activity // inferred from electronic annotation /// 0008914 // leucyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016755 // transferase activity, transferring amino-acyl groups // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16755 // transferase activity, transferring amino-acyl groups // inferred from electronic annotation /// 8415 // acyltransferase activity // inferred from electronic annotation /// 8914 // leucyltransferase activity // inferred from electronic annotation
abc_b0199_at b0199 Escherichia coli Mar 11, 2009 Exemplar sequence 220622 /start=221622 /end=222645 /direction=- /description=ATP-binding component of a transporter DL-methionine transporter ATP-binding subunit /// DL-methionine transporter subunit metN /// metN 1039648 913972 944896 956944 0006810 // transport // inferred from electronic annotation /// 0006865 // amino acid transport // inferred from electronic annotation /// 0015821 // methionine transport // inferred from electronic annotation /// 0048473 // D-methionine transport // inferred from electronic annotation /// 15821 // methionine transport // inferred from electronic annotation /// 48473 // D-methionine transport // inferred from electronic annotation /// 6810 // transport // inferred from electronic annotation /// 6865 // amino acid transport // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0009276 // Gram-negative-bacterium-type cell wall // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 5886 // plasma membrane // inferred from electronic annotation /// 9276 // Gram-negative-bacterium-type cell wall // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0015424 // amino acid-transporting ATPase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from electronic annotation /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0048474 // D-methionine transmembrane transporter activity // inferred from electronic annotation /// 15424 // amino acid-transporting ATPase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 16787 // hydrolase activity // inferred from electronic annotation /// 16887 // ATPase activity // inferred from electronic annotation /// 17111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 48474 // D-methionine transmembrane transporter activity // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 5524 // ATP binding // inferred from electronic annotation
abrB_b0715_at b0715 Escherichia coli Mar 11, 2009 Exemplar sequence 744946 /start=745946 /end=747037 /direction=- /description=putative transport protein putative transport protein /// predicted regulator /// putative transport protein abrB /// abrB /// ECs0740 917109 945321 957811 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation /// 5886 // plasma membrane // inferred from electronic annotation
accA_b0185_at b0185 Escherichia coli Mar 11, 2009 Exemplar sequence 207621 /start=208621 /end=209580 /direction=+ /description=acetylCoA carboxylase, carboxytransferase component, alpha subunit acetyl-CoA carboxylase carboxyltransferase subunit alpha /// acetyl-CoA carboxylase, carboxytransferase, alpha subunit /// acetyl-CoA carboxylase carboxyltransferase subunit alpha accA /// accA /// ECs0187 913907 944895 956919 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 6633 // fatty acid biosynthetic process // inferred from electronic annotation /// 8610 // lipid biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0009317 // acetyl-CoA carboxylase complex // inferred from electronic annotation /// 5737 // cytoplasm // inferred from electronic annotation /// 9317 // acetyl-CoA carboxylase complex // inferred from electronic annotation 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016874 // ligase activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 3989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction
accB_b3255_at b3255 Escherichia coli Mar 11, 2009 Exemplar sequence 3402073 /start=3403073 /end=3403543 /direction=+ /description=acetylCoA carboxylase, BCCP subunit; carrier of biotin acetyl-CoA carboxylase biotin carboxyl carrier protein subunit /// acetyl CoA carboxylase, BCCP subunit /// acetyl-CoA carboxylase biotin carboxyl carrier protein subunit accB /// accB /// ECs4127 1040393 916025 947758 958692 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 6633 // fatty acid biosynthetic process // inferred from electronic annotation /// 8610 // lipid biosynthetic process // inferred from electronic annotation 0009317 // acetyl-CoA carboxylase complex // inferred from electronic annotation /// 9317 // acetyl-CoA carboxylase complex // inferred from electronic annotation 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0009374 // biotin binding // inferred from electronic annotation /// 3989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 9374 // biotin binding // inferred from electronic annotation
accC_b3256_at b3256 Escherichia coli Mar 11, 2009 Exemplar sequence 3402554 /start=3403554 /end=3404903 /direction=+ /description=acetyl CoA carboxylase, biotin carboxylase subunit acetyl-CoA carboxylase biotin carboxylase subunit /// acetyl-CoA carboxylase, biotin carboxylase subunit /// acetyl-CoA carboxylase biotin carboxylase subunit accC /// accC /// ECs4128 1040394 916024 947761 958693 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 6633 // fatty acid biosynthetic process // inferred from electronic annotation /// 8152 // metabolic process // inferred from electronic annotation /// 8610 // lipid biosynthetic process // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0004075 // biotin carboxylase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0009374 // biotin binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 3989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 4075 // biotin carboxylase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 9374 // biotin binding // inferred from electronic annotation
accD_b2316_at b2316 Escherichia coli Mar 11, 2009 Exemplar sequence 2430032 /start=2431032 /end=2431946 /direction=- /description=acetylCoA carboxylase, carboxytransferase component, beta subunit acetyl-CoA carboxylase subunit beta /// acetyl-CoA carboxylase, beta (carboxyltranferase) subunit /// acetyl-CoA carboxylase subunit beta accD /// accD /// ECs3200 916908 946796 957472 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 6633 // fatty acid biosynthetic process // inferred from electronic annotation /// 8610 // lipid biosynthetic process // inferred from electronic annotation 0005829 // cytosol // inferred from direct assay /// 0009317 // acetyl-CoA carboxylase complex // inferred from electronic annotation /// 5829 // cytosol // inferred from direct assay /// 9317 // acetyl-CoA carboxylase complex // inferred from electronic annotation 0003989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 3989 // acetyl-CoA carboxylase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 8270 // zinc ion binding // inferred from electronic annotation
aceA_b4015_at b4015 Escherichia coli Mar 11, 2009 Exemplar sequence 4213688 /start=4214688 /end=4215992 /direction=+ /description=isocitrate lyase isocitrate lyase aceA 1039771 948517 0006097 // glyoxylate cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0019752 // carboxylic acid metabolic process // inferred from electronic annotation /// 19752 // carboxylic acid metabolic process // inferred from electronic annotation /// 6097 // glyoxylate cycle // inferred from electronic annotation /// 6099 // tricarboxylic acid cycle // inferred from electronic annotation /// 8152 // metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 5737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004451 // isocitrate lyase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4451 // isocitrate lyase activity // inferred from electronic annotation
aceB_b4014_at b4014 Escherichia coli Mar 11, 2009 Exemplar sequence 4212057 /start=4213057 /end=4214658 /direction=+ /description=malate synthase A malate synthase /// malate synthase A /// malate synthase aceB /// aceB /// ECs4932 1039772 914847 948512 960116 0006097 // glyoxylate cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 6097 // glyoxylate cycle // inferred from electronic annotation /// 6099 // tricarboxylic acid cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 5737 // cytoplasm // inferred from electronic annotation 0003824 // catalytic activity // inferred from electronic annotation /// 0004474 // malate synthase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016740 // transferase activity // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4474 // malate synthase activity // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction
aceE_b0114_at b0114 Escherichia coli Mar 11, 2009 Exemplar sequence 122017 /start=123017 /end=125680 /direction=+ /description=pyruvate dehydrogenase (decarboxylase component) pyruvate dehydrogenase subunit E1 /// pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding aceE /// aceE 1040471 913657 944834 956809 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic annotation /// 55114 // oxidation reduction // inferred from electronic annotation /// 6096 // glycolysis // inferred from electronic annotation /// 8152 // metabolic process // inferred from electronic annotation 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 0000287 // magnesium ion binding // inferred from electronic annotation /// 0003824 // catalytic activity // inferred from electronic annotation /// 0004739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 4739 // pyruvate dehydrogenase (acetyl-transferring) activity // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction
aceF_b0115_at b0115 Escherichia coli Mar 11, 2009 Exemplar sequence 124695 /start=125695 /end=127587 /direction=+ /description=pyruvate dehydrogenase (dihydrolipoyltransacetylase component) dihydrolipoamide acetyltransferase /// pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 aceF /// aceF 913659 944794 956812 0006096 // glycolysis // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 6096 // glycolysis // inferred from electronic annotation /// 8152 // metabolic process // inferred from electronic annotation 0045254 // pyruvate dehydrogenase complex // inferred from electronic annotation /// 45254 // pyruvate dehydrogenase complex // inferred from electronic annotation 0004742 // dihydrolipoyllysine-residue acetyltransferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0031405 // lipoic acid binding // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 31405 // lipoic acid binding // inferred from electronic annotation /// 4742 // dihydrolipoyllysine-residue acetyltransferase activity // inferred from electronic annotation /// 5515 // protein binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction /// 8415 // acyltransferase activity // inferred from electronic annotation
aceK_b4016_at b4016 Escherichia coli Mar 11, 2009 Exemplar sequence 4215175 /start=4216175 /end=4217911 /direction=+ /description=isocitrate dehydrogenase kinase/phosphatase bifunctional isocitrate dehydrogenase kinase/phosphatase protein /// isocitrate dehydrogenase kinase/phosphatase aceK /// aceK 914849 944797 960114 0006006 // glucose metabolic process // inferred from electronic annotation /// 0006097 // glyoxylate cycle // inferred from electronic annotation /// 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 6006 // glucose metabolic process // inferred from electronic annotation /// 6097 // glyoxylate cycle // inferred from electronic annotation /// 6099 // tricarboxylic acid cycle // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 5737 // cytoplasm // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electronic annotation /// 0008772 // [isocitrate dehydrogenase (NADP+)] kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 0016791 // phosphatase activity // inferred from electronic annotation /// 16301 // kinase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16787 // hydrolase activity // inferred from electronic annotation /// 16788 // hydrolase activity, acting on ester bonds // inferred from electronic annotation /// 16791 // phosphatase activity // inferred from electronic annotation /// 4721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 8772 // [isocitrate dehydrogenase (NADP+)] kinase activity // inferred from electronic annotation
ackA_b2296_at b2296 Escherichia coli Mar 11, 2009 Exemplar sequence 2410490 /start=2411490 /end=2412692 /direction=+ /description=acetate kinase acetate kinase /// acetate kinase A and propionate kinase 2 /// acetate kinase ackA /// ackA /// ECs3180 1038381 916888 946775 958184 0006082 // organic acid metabolic process // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 16310 // phosphorylation // inferred from electronic annotation /// 6082 // organic acid metabolic process // inferred from electronic annotation /// 8152 // metabolic process // inferred from electronic annotation 0005622 // intracellular // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct assay /// 0005829 // cytosol // inferred from direct assay /// 5622 // intracellular // inferred from electronic annotation /// 5737 // cytoplasm // inferred from electronic annotation /// 5739 // mitochondrion // inferred from direct assay /// 5829 // cytosol // inferred from direct assay 0008776 // acetate kinase activity // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016774 // phosphotransferase activity, carboxyl group as acceptor // inferred from electronic annotation /// 16301 // kinase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16774 // phosphotransferase activity, carboxyl group as acceptor // inferred from electronic annotation /// 8776 // acetate kinase activity // inferred from electronic annotation
acnA_b1276_at b1276 Escherichia coli Mar 11, 2009 Exemplar sequence 1332855 /start=1333855 /end=1336530 /direction=+ /description=aconitate hydrase 1 aconitate hydratase /// aconitate hydratase 1 /// aconitate hydratase acnA /// acnA /// ECs1849 1035529 912815 946724 961382 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 6099 // tricarboxylic acid cycle // inferred from electronic annotation /// 8152 // metabolic process // inferred from electronic annotation 0003994 // aconitate hydratase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 3994 // aconitate hydratase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 5515 // protein binding // inferred from physical interaction
acnB_b0118_at b0118 Escherichia coli Mar 11, 2009 Exemplar sequence 130615 /start=131615 /end=134212 /direction=+ /description=aconitate hydrase B bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase /// bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase acnB /// ECs0122 913670 944864 956815 0006099 // tricarboxylic acid cycle // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 6099 // tricarboxylic acid cycle // inferred from electronic annotation /// 8152 // metabolic process // inferred from electronic annotation 0003994 // aconitate hydratase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016829 // lyase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation /// 0051539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 3994 // aconitate hydratase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 5515 // protein binding // inferred from electronic annotation
acpD_b1412_at b1412 Escherichia coli Mar 11, 2009 Exemplar sequence 1479279 /start=1480279 /end=1480884 /direction=- /description=acyl carrier protein phosphodiesterase NADH-azoreductase, FMN-dependent azoR 947569 0055114 // oxidation reduction // inferred from electronic annotation /// 55114 // oxidation reduction // inferred from electronic annotation 0008752 // FMN reductase activity // inferred from electronic annotation /// 0009055 // electron carrier activity // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016652 // oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor // inferred from electronic annotation /// 0050662 // coenzyme binding // inferred from electronic annotation /// 10181 // FMN binding // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 16652 // oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor // inferred from electronic annotation /// 50662 // coenzyme binding // inferred from electronic annotation /// 8752 // FMN reductase activity // inferred from electronic annotation /// 9055 // electron carrier activity // inferred from electronic annotation
acpP_b1094_at b1094 Escherichia coli Mar 11, 2009 Exemplar sequence 1149838 /start=1150838 /end=1151074 /direction=+ /description=acyl carrier protein acyl carrier protein /// acyl carrier protein (ACP) acpP /// acpP 1035063 912360 944805 959438 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 6633 // fatty acid biosynthetic process // inferred from electronic annotation /// 8610 // lipid biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 5737 // cytoplasm // inferred from electronic annotation 0000036 // acyl carrier activity // inferred from electronic annotation /// 0031177 // phosphopantetheine binding // inferred from electronic annotation /// 0048037 // cofactor binding // inferred from electronic annotation /// 31177 // phosphopantetheine binding // inferred from electronic annotation /// 36 // acyl carrier activity // inferred from electronic annotation /// 48037 // cofactor binding // inferred from electronic annotation
acpS_b2563_at b2563 Escherichia coli Mar 11, 2009 Exemplar sequence 2697638 /start=2698638 /end=2699017 /direction=- /description=CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase holo-[acyl-carrier-protein] synthase 1 acpS 947037 0006633 // fatty acid biosynthetic process // inferred from electronic annotation /// 0008610 // lipid biosynthetic process // inferred from electronic annotation /// 0009059 // macromolecule biosynthetic process // inferred from electronic annotation /// 6633 // fatty acid biosynthetic process // inferred from electronic annotation /// 8610 // lipid biosynthetic process // inferred from electronic annotation /// 9059 // macromolecule biosynthetic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 5737 // cytoplasm // inferred from electronic annotation 0000287 // magnesium ion binding // inferred from electronic annotation /// 0008897 // holo-[acyl-carrier-protein] synthase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8897 // holo-[acyl-carrier-protein] synthase activity // inferred from electronic annotation
acrA_b0463_at b0463 Escherichia coli Mar 11, 2009 Exemplar sequence 482650 /start=483650 /end=484843 /direction=- /description=acridine efflux pump acriflavin resistance protein A /// acridine efflux pump /// multidrug efflux system /// acridine efflux pump acrA /// acrA /// acrA /// ECs0516 1035417 914620 945112 957439 0006810 // transport // inferred from electronic annotation /// 0009306 // protein secretion // inferred from electronic annotation /// 0046677 // response to antibiotic // inferred from electronic annotation /// 46677 // response to antibiotic // inferred from electronic annotation /// 6810 // transport // inferred from electronic annotation /// 9306 // protein secretion // inferred from electronic annotation 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 5886 // plasma membrane // inferred from electronic annotation 0008565 // protein transporter activity // inferred from electronic annotation /// 8565 // protein transporter activity // inferred from electronic annotation

Total number of rows: 7312

Table truncated, full table size 5382 Kbytes.






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