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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Dec 23, 2013 |
| Title |
PitBullTerrier-BI_27381 |
| Sample type |
genomic |
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| Source name |
PitBullTerrier-BI_27381
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| Organism |
Canis lupus familiaris |
| Characteristics |
tissue: blood
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from blood using the Puregene DNA purification Kit (Gentra Systems) protocol.
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| Label |
Biotin
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| Label protocol |
As per manufacturer (Affymetrix)
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| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
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| Scan protocol |
The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
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| Data processing |
The array image was acquired using Affymetrix GeneChip® Operating Software.
Genotype Call (SNP call): AA, AB, BB, NC, and NoCall; 'Signal' = Summarized signal
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| Submission date |
Dec 22, 2013 |
| Last update date |
Dec 23, 2013 |
| Contact name |
Hyun Ji Noh |
| E-mail(s) |
noh@broadinstitute.org
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| Organization name |
Broad Institute
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| Department |
Genome Sequencing and Analysis
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| Street address |
7 Cambridge Center
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| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02141 |
| Country |
USA |
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| Platform ID |
GPL18091 |
| Series (1) |
| GSE53577 |
Affymetrix SNP array data for Pit Bull Terrier |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSM1296339_ANTSY_p_DOGNEW_0023_DogSty06m520431_G04_376038.CEL.gz |
12.3 Mb |
(ftp)(http) |
CEL |
| GSM1296339_ANTSY_p_DOGNEW_0023_DogSty06m520431_G04_376038.brlmm-p.chp.gz |
2.1 Mb |
(ftp)(http) |
CHP |
| GSM1296339_ANTSY_p_DOGNEW_0023_DogSty06m520431_G04_376038.brlmm-p.chp.txt.gz |
2.1 Mb |
(ftp)(http) |
TXT |
| Processed data provided as supplementary file |
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