GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM139541
Query DataSets for GSM139541
Status
Public on Dec 19, 2008
Title
HB04
Sample type
RNA
Source name
Human Breast Tumor
Organism
Homo sapiens
Characteristics
Label : pCR
Estrogen Receptor : Ep
Progesterone Receptor : Pp
Size: T2
Node: N1
Treatment protocol
none
Extracted molecule
total RNA
Extraction protocol
Qiagen RNeasy Mini Kit
Label
biotin
Label protocol
standard Affymetrix procedure
Hybridization protocol
Standard Affymetrix procedure
Scan protocol
Standard Affymetrix procedure
Description
Series of 102 tumours
Data processing
RMA
Submission date
Oct 11, 2006
Last update date
Jun 06, 2022
Contact name
Mauro Delorenzi
E-mail(s)
Mauro.Delorenzi@unil.ch
Organization name
Swiss Institute of Bioinformatics
Lab
BCF
Street address
Génopode Building, Quartier Sorge
City
Lausanne
ZIP/Postal code
1015
Country
Switzerland
Platform ID
GPL1352
Series (1)
GSE4779
A stroma-related gene signature predicts sensitivity to epirubicin-containing neoadjuvant chemotherapy in breast cancer.
Relations
Reanalyzed by
GSE205568
Data table header descriptions
ID_REF
VALUE
RMA-calculated signal intensity
Data table
ID_REF
VALUE
1053_3p_at
8.65782495029473
117_3p_at
7.75971361623457
1494_3p_f_at
7.56172602104885
1552275_3p_s_at
8.10683128082594
1552281_3p_at
9.1477701656765
1552296_3p_at
5.76165155329457
1552302_3p_at
6.10957029053459
1552311_3p_a_at
8.27910217956333
1552321_3p_a_at
5.01718727051396
1552340_3p_at
6.50713370564132
1552343_3p_s_at
7.00050317199249
1552354_3p_at
7.57877523963801
1552476_3p_s_at
7.84963549458559
1552480_3p_s_at
3.66289326066289
1552504_3p_a_at
7.62525011047467
1552518_3p_s_at
5.36836956076015
1552528_3p_at
8.05647658234661
1552535_3p_at
7.7433496146796
1552566_3p_at
6.36178816122472
1552575_3p_a_at
7.81473335251335
Total number of rows:
61297
Table truncated, full table size
2186 Kbytes
.
Supplementary file
Size
Download
File type/resource
gsm139541.cel.gz
8.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
