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Sample GSM139542 Query DataSets for GSM139542
Status Public on Dec 19, 2008
Title HB05
Sample type RNA
 
Source name Human Breast Tumor
Organism Homo sapiens
Characteristics Label : npCR
Estrogen Receptor : En
Progesterone Receptor : Pn
Size: T2
Node: N1
Treatment protocol none
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol standard Affymetrix procedure
 
Hybridization protocol Standard Affymetrix procedure
Scan protocol Standard Affymetrix procedure
Description Series of 102 tumours
Data processing RMA
 
Submission date Oct 11, 2006
Last update date Jun 06, 2022
Contact name Mauro Delorenzi
E-mail(s) Mauro.Delorenzi@unil.ch
Organization name Swiss Institute of Bioinformatics
Lab BCF
Street address GĂ©nopode Building, Quartier Sorge
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platform ID GPL1352
Series (1)
GSE4779 A stroma-related gene signature predicts sensitivity to epirubicin-containing neoadjuvant chemotherapy in breast cancer.
Relations
Reanalyzed by GSE205568

Data table header descriptions
ID_REF
VALUE RMA-calculated signal intensity

Data table
ID_REF VALUE
1053_3p_at 8.9548388246438
117_3p_at 7.55331494227513
1494_3p_f_at 7.28759559216457
1552275_3p_s_at 7.60031019173896
1552281_3p_at 8.9752637728862
1552296_3p_at 5.95932505627838
1552302_3p_at 5.6912107053926
1552311_3p_a_at 8.42840804991851
1552321_3p_a_at 4.54788177980556
1552340_3p_at 6.48286288103538
1552343_3p_s_at 7.1733246366607
1552354_3p_at 7.32187432580826
1552476_3p_s_at 7.45188277711855
1552480_3p_s_at 3.39497387902029
1552504_3p_a_at 7.77857057665417
1552518_3p_s_at 6.19375560435545
1552528_3p_at 8.15439984405357
1552535_3p_at 8.07872899667076
1552566_3p_at 6.48989198262047
1552575_3p_a_at 7.9315712083067

Total number of rows: 61297

Table truncated, full table size 2186 Kbytes.




Supplementary file Size Download File type/resource
gsm139542.cel.gz 8.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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