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Sample GSM142380 Query DataSets for GSM142380
Status Public on Aug 08, 2007
Title ApoE-/+, offspring hypercholesterolemic ApoE-/- mother, wt father LUMC_HKG_MOUSE_430_2-7
Sample type RNA
 
Source name carotic artery
Organism Mus musculus
Characteristics genotype/variation (offspring): ApoE-/+
cross: hypercholesterolemic ApoE-/- mother, wt father
Biomaterial provider Anatomy, Fanneke Alkemade
Treatment protocol Disection, immediate storage in liquid nitrogen
Extracted molecule total RNA
Extraction protocol RNAqueous-Micro
Label Biotin
Label protocol 2 cycle
AmbionMessageAmpIIaRNAAmplification kit, oligodT
AmbionMessageAmpII-Biotin Enhanced
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description ApoE-/+, offspring hypercholesterolemic ApoE-/- mother, wt father
Data processing MAS5, GCOS
 
Submission date Oct 25, 2006
Last update date Aug 28, 2018
Contact name Anja Schiel
E-mail(s) anja.schiel@medisin.uio.no
Organization name Leiden University Medical Center
Department Human Clinical Genetics
Lab Frants
Street address Einthovenweg 20
City Leiden
ZIP/Postal code 2300RC
Country Netherlands
 
Platform ID GPL1261
Series (1)
GSE6134 Offsprings of crosses between hypercholesterolemic and normocholesterolemic parents LUMC-HKG-ApoE-Atherosclerosis
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE as derived by MAS5
ABS_CALL present absent as MAS5
DETECTION P-VALUE as derived by MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 179.8 P 0.000581
AFFX-BioB-M_at 297.5 P 4.4e-05
AFFX-BioB-3_at 161.2 P 0.000258
AFFX-BioC-5_at 553.1 P 4.4e-05
AFFX-BioC-3_at 681.9 P 4.4e-05
AFFX-BioDn-5_at 1026.1 P 4.4e-05
AFFX-BioDn-3_at 2053.2 P 4.4e-05
AFFX-CreX-5_at 6330.8 P 5.2e-05
AFFX-CreX-3_at 7319.2 P 4.4e-05
AFFX-DapX-5_at 6.7 M 0.062929
AFFX-DapX-M_at 3.2 A 0.804734
AFFX-DapX-3_at 1.2 A 0.949771
AFFX-LysX-5_at 0.4 A 0.932322
AFFX-LysX-M_at 1.6 A 0.824672
AFFX-LysX-3_at 7.4 A 0.440641
AFFX-PheX-5_at 0.7 A 0.937087
AFFX-PheX-M_at 0.6 A 0.883908
AFFX-PheX-3_at 3.4 A 0.574038
AFFX-ThrX-5_at 5.9 A 0.327079
AFFX-ThrX-M_at 3.4 A 0.645547

Total number of rows: 45101

Table truncated, full table size 1197 Kbytes.




Supplementary file Size Download File type/resource
GSM142380.CEL.gz 3.6 Mb (ftp)(http) CEL

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