|
| Status |
Public on Jan 14, 2016 |
| Title |
M-DKO2 [2] |
| Sample type |
SRA |
| |
|
| Source name |
129 mouse with combined disruption of the GPx1 and GPx2
|
| Organism |
Mus musculus |
| Characteristics |
strain: 129
cell type: colon epithelia
|
| Growth protocol |
SY5Y cells (ATCC #CRL- 2266) were maintained in 1:1 Dubelcco’s modified Eagle’s medium (DMEM) and F12 medium, then supplemented with 10% fetal bovine serum and grown at 37°C under 5% CO2.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Library preparation was done with the TruSeq ChIP Sample Prep Kit (Illumina)
|
| |
|
| Library strategy |
OTHER |
| Library source |
genomic |
| Library selection |
other |
| Instrument model |
Illumina HiScanSQ |
| |
|
| Description |
hmC-Seq
|
| Data processing |
reads aligned to the mm9 & h18 genomes using BWA
peaks were called using MACS v1.4
Genome_build: mm9 & hg18
Supplementary_files_format_and_content: wig files generated using MACS
|
| |
|
| Submission date |
Jul 24, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Matthieu Defrance |
| Organization name |
Université Libre de Bruxelles
|
| Lab |
Cancer Epigenetics
|
| Street address |
CP614 route de Lennik 808
|
| City |
Bruxelles |
| ZIP/Postal code |
1070 |
| Country |
Belgium |
| |
|
| Platform ID |
GPL16173 |
| Series (1) |
| GSE59718 |
Genome-wide hydroxymethylcytosine pattern changes in response to oxidative stress |
|
| Relations |
| BioSample |
SAMN02935550 |
| SRA |
SRX660512 |
