NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM147162 Query DataSets for GSM147162
Status Public on Mar 19, 2008
Title ATCC25404 wild type LB 24hr biofilm cells
Sample type RNA
 
Source name ATCC25404 wild type; 24 hours; LB
Organism Escherichia coli
Characteristics RNA extracted from biofilm cells of E. coli K12 ATCC25404 wild type after 24 hours of growth in LB with glass wool
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Mini Kit
Label biotin
Label protocol Enzo BioArray Terminal Labeling Kit
 
Hybridization protocol Affymetrix Genechip Expression Analysis Technical Manual
Scan protocol Affymetrix Genechip Expression Analysis Technical Manual
Description RNA extracted from biofilm cells of E. coli K12 ATCC25404 wild type after 24 hours of growth in LB with glass wool
Data processing MAS 5.0 Expression Analysis Default Setting
 
Submission date Nov 27, 2006
Last update date Mar 19, 2008
Contact name Xiaole Yang
E-mail(s) xiaole.yang@chemail.tamu.edu
Organization name Texas A & M University
Street address Chemical Engineering Department
City College Station
State/province TX
ZIP/Postal code 77840
Country USA
 
Platform ID GPL199
Series (1)
GSE6923 E. coli K-12 wild type with R1drd19 biofilm vs wild type without R1drd19 biofilm

Data table header descriptions
ID_REF
Stat Pairs Number of perfect match probes for the probeset
Stat Pairs Used Number of the mismatch probes for the probeset
VALUE Signal intensity accepted from the probeset
ABS_CALL Probeset signal: absent or present
DETECTION P-VALUE Probeset signal: p-value (shows the coherency of the results)

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 2 2 1182.5 A 0.125
AFFX-BioC-3_at 1 1 159.7 A 0.25
AFFX-CreX-5_at 20 20 4.4 A 0.645547
AFFX-CreX-3_at 20 20 4.5 A 0.997133
AFFX-DapX-5_at 20 20 2695.6 P 0.000044
AFFX-DapX-M_at 20 20 2099.9 P 0.000081
AFFX-DapX-3_at 20 20 1489.4 P 0.000044
AFFX-LysX-5_at 20 20 234.9 P 0.000052
AFFX-LysX-M_at 20 20 168.7 P 0.000195
AFFX-LysX-3_at 20 20 227.5 P 0.000052
AFFX-PheX-5_at 20 20 577.7 P 0.000095
AFFX-PheX-M_at 20 20 498.8 P 0.000297
AFFX-PheX-3_at 20 20 227.7 P 0.000581
AFFX-ThrX-5_at 20 20 927.2 P 0.000044
AFFX-ThrX-M_at 20 20 704 P 0.000258
AFFX-ThrX-3_at 20 20 960.8 P 0.00006
AFFX-TrpnX-5_at 20 20 19.9 A 0.300591
AFFX-TrpnX-M_at 20 20 69.2 A 0.067678
AFFX-TrpnX-3_at 20 20 6.6 A 0.737173
AFFX-HXB2_5_at 20 20 0.6 A 0.941556

Total number of rows: 7312

Table truncated, full table size 302 Kbytes.




Supplementary file Size Download File type/resource
GSM147162.CEL.gz 1.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap