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GEO accession:
Sample GSM149830
Query DataSets for GSM149830
Status
Public on Mar 01, 2007
Title
hy5 mutant vs wildtype expression, rep2
Sample type
RNA
Channel 1
Source name
wildtype reference
Organism
Arabidopsis thaliana
Characteristics
4 days wildtype seedling
Growth protocol
continuous white light for 4 days
Extracted molecule
total RNA
Extraction protocol
Trizol/RNeasy
Label
Cy5
Label protocol
amino-allyl and monofunctional dye
Channel 2
Source name
hy5 mutant
Organism
Arabidopsis thaliana
Characteristics
4 days hy5 mutant seedling
Extracted molecule
total RNA
Extraction protocol
Trizol/RNeasy
Label
Cy3
Label protocol
amino-allyl and monofunctional dye
Hybridization protocol
42C 50% formamide
Scan protocol
Axon GenePix 4000B
Description
hy5 mutant vs. wildtype
Data processing
LIMMA in bioconductor R package
Submission date
Dec 13, 2006
Last update date
Dec 13, 2006
Contact name
Kun He
E-mail(s)
hek@mail.cbi.pku.edu.cn
Phone
203-432-8909
Organization name
Yale University
Department
Molecular, Cellular & Developmental Biology
Lab
Denglab
Street address
165 Prospect
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL988
Series (1)
GSE6517
expression profiling of wild type and the hy5 mutant in arabidopsis
Data table header descriptions
ID_REF
VALUE
normalized log ratio of CH1/CH2
CH1_SIG_MEAN
Channel 1 (Cy5, wildtype) mean pixel intensity
CH1_BKG_MEDIAN
Channel 1 Background median pixel intensity
CH2_SIG_MEAN
Channel 2 (Cy3, hy5 mutant) mean pixel intensity
CH2_BKG_MEDIAN
Channel 2 Background median pixel intensity
Data table
ID_REF
VALUE
CH1_SIG_MEAN
CH1_BKG_MEDIAN
CH2_SIG_MEAN
CH2_BKG_MEDIAN
3203159
-0.127779542562049
3608
296
3828
236
3203161
0.155611850676135
1983
306
1814
233
3203163
-0.145087252675501
3609
298
3851
233
3203165
0.238757229374275
1020
301
914
236
3203167
-0.295361635392693
3926
313
4435
234
3203169
0.237606617505811
1244
304
1101
235
3203171
-0.229226774778839
4239
310
4667
234
3203173
0.141346592048818
1272
310
1150
229
3203175
-0.290566210598684
506
304
445
231
3203177
0.367890312004993
520
296
402
227
3203179
-0.0199178149463001
2113
293
2091
231
3203181
-0.286587724200855
366
304
262
225
3203183
0.296642399352997
465
335
318
240
3203185
0.371274494674588
384
298
268
226
3203187
0.317381702674862
754
295
667
232
3203189
-1.57616390439800
1712
303
3087
234
3203191
1.45783011630279
352
303
239
229
3203193
0.93570537618628
745
303
546
230
3203195
-1.05711571409104
427
298
397
233
3203197
-1.88722348893600
386
307
352
230
Total number of rows:
27648
Table truncated, full table size
1150 Kbytes
.
Supplementary data files not provided
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