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GEO accession:
Sample GSM149840
Query DataSets for GSM149840
Status
Public on Mar 01, 2007
Title
hy5 mutant vs wildtype expression, rep4
Sample type
RNA
Channel 1
Source name
hy5 mutant
Organism
Arabidopsis thaliana
Characteristics
4 days hy5 mutant seedling
Growth protocol
continuous white light for 4 days
Extracted molecule
total RNA
Extraction protocol
Trizol/RNeasy
Label
Cy5
Label protocol
amino-allyl and monofunctional dye
Channel 2
Source name
wildtype reference
Organism
Arabidopsis thaliana
Characteristics
4 days wildtype seedling
Extracted molecule
total RNA
Extraction protocol
Trizol/RNeasy
Label
Cy3
Label protocol
amino-allyl and monofunctional dye
Hybridization protocol
42C 50% formamide
Scan protocol
Axon GenePix 4000B
Description
hy5 mutant vs. wildtype
Data processing
LIMMA in bioconductor R package
Submission date
Dec 13, 2006
Last update date
Dec 13, 2006
Contact name
Kun He
E-mail(s)
hek@mail.cbi.pku.edu.cn
Phone
203-432-8909
Organization name
Yale University
Department
Molecular, Cellular & Developmental Biology
Lab
Denglab
Street address
165 Prospect
City
New Haven
State/province
CT
ZIP/Postal code
06520
Country
USA
Platform ID
GPL988
Series (1)
GSE6517
expression profiling of wild type and the hy5 mutant in arabidopsis
Data table header descriptions
ID_REF
VALUE
normalized log ratio of CH1/CH2
CH1_SIG_MEAN
Channel 1 (Cy5, hy5 mutant) mean pixel intensity
CH1_BKG_MEDIAN
Channel 1 Background median pixel intensity
CH2_SIG_MEAN
Channel 2 (Cy3, wildtype) mean pixel intensity
CH2_BKG_MEDIAN
Channel 2 Background median pixel intensity
Data table
ID_REF
VALUE
CH1_SIG_MEAN
CH1_BKG_MEDIAN
CH2_SIG_MEAN
CH2_BKG_MEDIAN
3203159
-2.10226378884204
815
798
686
662
3203161
-0.346961080887531
1434
758
1310
698
3203163
null
817
758
632
643
3203165
null
874
797
627
632
3203167
null
846
811
623
667
3203169
-0.67680808101095
836
763
650
623
3203171
-0.0394868750877936
24851
832
21859
631
3203173
-0.995590986782696
820
805
661
647
3203175
-0.298069493377004
1022
800
781
615
3203177
-0.189811607102766
762
753
621
610
3203179
0.309867454314449
877
748
635
616
3203181
null
849
793
605
618
3203183
null
771
804
601
618
3203185
null
821
776
587
621
3203187
null
849
754
584
614
3203189
null
859
796
578
610
3203191
null
830
794
607
615
3203193
-0.788755054130297
867
792
651
616
3203195
null
840
755
609
623
3203197
null
816
779
603
635
Total number of rows:
27648
Table truncated, full table size
1034 Kbytes
.
Supplementary data files not provided
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