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Sample GSM150198 Query DataSets for GSM150198
Status Public on May 01, 2007
Title PE_N_M165
Sample type RNA
Source name uterus - Proliferative endometrium from normal patient
Organism Homo sapiens
Characteristics Proliferative Phase Normal
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Proliferative endometrium from normal patient
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1134.7 P 0.000509
AFFX-BioB-M_at 1316.2 P 0.000044
AFFX-BioB-3_at 923.5 P 0.00006
AFFX-BioC-5_at 2623.6 P 0.000052
AFFX-BioC-3_at 3634.3 P 0.000044
AFFX-BioDn-5_at 5083.4 P 0.000044
AFFX-BioDn-3_at 15804.3 P 0.000081
AFFX-CreX-5_at 34557.4 P 0.000052
AFFX-CreX-3_at 39233.2 P 0.000044
AFFX-DapX-5_at 108.7 P 0.020022
AFFX-DapX-M_at 12.8 A 0.559354
AFFX-DapX-3_at 9.7 A 0.883908
AFFX-LysX-5_at 30.8 A 0.544587
AFFX-LysX-M_at 62 A 0.559354
AFFX-LysX-3_at 19.7 A 0.5
AFFX-PheX-5_at 8 A 0.834139
AFFX-PheX-M_at 2.8 A 0.916408
AFFX-PheX-3_at 31.1 A 0.804734
AFFX-ThrX-5_at 18.3 A 0.699394
AFFX-ThrX-M_at 49.2 A 0.455413

Total number of rows: 54675

Table truncated, full table size 1454 Kbytes.

Supplementary file Size Download File type/resource
GSM150198.CEL.gz 4.7 Mb (ftp)(http) CEL

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