GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM150202 Query DataSets for GSM150202
Status Public on May 01, 2007
Title ESE_D_27A
Sample type RNA
Source name uterus - Early secretory endometrium from patient with endometriosis
Organism Homo sapiens
Characteristics Early Secretory Phase Endometriosis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Early secretory endometrium from patient with endometriosis
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 561.6 P 0.000754
AFFX-BioB-M_at 835.4 P 0.00011
AFFX-BioB-3_at 600 P 0.00034
AFFX-BioC-5_at 2231.7 P 0.000044
AFFX-BioC-3_at 2730.8 P 0.000044
AFFX-BioDn-5_at 5159.7 P 0.000044
AFFX-BioDn-3_at 14193.3 P 0.00007
AFFX-CreX-5_at 32838.3 P 0.000052
AFFX-CreX-3_at 39943.3 P 0.000044
AFFX-DapX-5_at 55.2 A 0.083592
AFFX-DapX-M_at 33.8 A 0.470241
AFFX-DapX-3_at 5.5 A 0.981719
AFFX-LysX-5_at 61.3 M 0.062929
AFFX-LysX-M_at 29.5 A 0.686277
AFFX-LysX-3_at 60.4 P 0.020013
AFFX-PheX-5_at 10.3 A 0.843268
AFFX-PheX-M_at 2.1 A 0.971575
AFFX-PheX-3_at 20.9 A 0.60308
AFFX-ThrX-5_at 34.1 A 0.60308
AFFX-ThrX-M_at 8.5 A 0.617411

Total number of rows: 54675

Table truncated, full table size 1451 Kbytes.

Supplementary file Size Download File type/resource
GSM150202.CEL.gz 4.7 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap