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Sample GSM150212 Query DataSets for GSM150212
Status Public on May 01, 2007
Title MSE_D_516
Sample type RNA
Source name uterus - Mid secretory endometrium from patient with endometriosis
Organism Homo sapiens
Characteristics Mid Secretory Phase Endometriosis
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
Label biotin
Label protocol biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
Hybridization protocol cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
Scan protocol Chips were scanned using the HR3000 scanner from Affymetrix.
Description Mid secretory endometrium from patient with endometriosis
Data processing The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
Submission date Dec 14, 2006
Last update date Aug 28, 2018
Contact name Linda Giudice
Phone 415-476-2039
Organization name University of California, San Francisco
Department OBGYN and RS
Lab Giudice Lab
Street address 513 Parnassus Ave. HSE 1619
City San Francisco
State/province CA
ZIP/Postal code 94122
Country USA
Platform ID GPL570
Series (1)
GSE6364 Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE GCOS-calculated signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC).
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
AFFX-BioB-5_at 1242.7 P 0.000662
AFFX-BioB-M_at 1728.3 P 0.000044
AFFX-BioB-3_at 1017.8 P 0.00011
AFFX-BioC-5_at 2275.8 P 0.000052
AFFX-BioC-3_at 2804 P 0.000044
AFFX-BioDn-5_at 6258.1 P 0.000044
AFFX-BioDn-3_at 17931.5 P 0.000044
AFFX-CreX-5_at 28365.8 P 0.000052
AFFX-CreX-3_at 34343 P 0.000044
AFFX-DapX-5_at 81.8 A 0.165861
AFFX-DapX-M_at 88.3 A 0.368438
AFFX-DapX-3_at 5 A 0.993813
AFFX-LysX-5_at 7.5 A 0.699394
AFFX-LysX-M_at 39.7 A 0.617401
AFFX-LysX-3_at 58.4 A 0.102165
AFFX-PheX-5_at 34.2 A 0.749204
AFFX-PheX-M_at 6.8 A 0.963431
AFFX-PheX-3_at 47.3 A 0.574038
AFFX-ThrX-5_at 87.4 A 0.48511
AFFX-ThrX-M_at 9 A 0.904333

Total number of rows: 54675

Table truncated, full table size 1453 Kbytes.

Supplementary file Size Download File type/resource
GSM150212.CEL.gz 4.8 Mb (ftp)(http) CEL

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