|
| Status |
Public on May 01, 2007 |
| Title |
MSE_D_540 |
| Sample type |
RNA |
| |
|
| Source name |
uterus - Mid secretory endometrium from patient with endometriosis
|
| Organism |
Homo sapiens |
| Characteristics |
Mid Secretory Phase Endometriosis
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA from whole tissue was performed according the manufacturer's instructions.
|
| Label |
biotin
|
| Label protocol |
biotinylated cRNA was generated from 5.0 ug total RNA using the Affymetrix labeling protocol.
|
| |
|
| Hybridization protocol |
cRNA was fragmented and hybridized overnight to Affymetrix U133 Plus 2.0 Genechips.
|
| Scan protocol |
Chips were scanned using the HR3000 scanner from Affymetrix.
|
| Description |
Mid secretory endometrium from patient with endometriosis
|
| Data processing |
The data were analyzed using the Gene Chip Operating Software Version 1.2 using the Affymetrix default settings and global scaling as the normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
Dec 14, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Linda Giudice |
| E-mail(s) |
giudice@obgyn.ucsf.edu
|
| Phone |
415-476-2039
|
| Organization name |
University of California, San Francisco
|
| Department |
OBGYN and RS
|
| Lab |
Giudice Lab
|
| Street address |
513 Parnassus Ave. HSE 1619
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94122 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (1) |
| GSE6364 |
Gene Profiling of Endometrium Reveals Progesterone Resistance and Candidate Genetic Loci in Women with Endometriosis |
|
| Relations |
| Reanalyzed by |
GSE64985 |
| Reanalyzed by |
GSE119087 |
