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Sample GSM15082 Query DataSets for GSM15082
Status Public on Jan 15, 2004
Title Day 16 Mouse #91 - 1st replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 16 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE958 Day 16 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 62245.3 53962 53132 5120.84 1069.54 1067 32.3868 7340.88 5414.17 5331.5 453.898 970.806 966 46.1963 -0.928358 0
2 52.692 1032.96 1030 26.5307 1052.43 1048.5 30.1234 67.908 930.462 919 58.1469 941.973 945.5 59.7649 0.110176 0
3 54.5173 1031.84 1032 24.7987 1051.91 1050 30.8749 56.0122 913 915 31.1462 951.841 951 51.7374 0 0
4 82.795 1061.46 1068 30.5591 1059.79 1058 29.034 103.864 975.462 978 51.2509 961.007 967 47.3146 0.0984623 0
5 49.6353 1026 1028 26.8468 1054.06 1055.5 27.5879 58.0698 908.04 903 32.3361 945.365 944.5 54.6533 0 0
6 67.1478 1056.63 1053.5 38.571 1067.18 1064 30.2865 64.5724 954.792 952 47.079 973.669 975 56.4864 -0.0169848 0
7 105.461 1016.75 1021.5 32.8677 1070.04 1074 34.5637 37.3707 883.208 886 52.8953 969.906 969 59.648 0 0
8 14617.9 13471.4 13292.5 1249.96 1066.07 1068 26.5779 25626.1 16628.9 16598 1538.37 968.42 972 46.6848 0.243797 0.809876104
9 219.627 1168.96 1170 34.8 1062.49 1061.5 28.331 236.623 1064.16 1048 49.4627 962.639 968 53.8942 0.0323729 0.107540446
10 273.892 1208.38 1210 22.2531 1056.76 1055.5 25.9842 326.018 1113.29 1120 61.4339 953.858 956 47.8284 0.0756621 0.251344056
11 59.3791 1056.22 1059 25.4865 1070.88 1070 31.9253 83.4076 965.407 961 46.0604 964.975 966 47.8954 0.147572 0
12 73415.6 61343.7 64494 5155.53 1061.06 1060 31.5569 91227.1 58960.3 61809 7081.97 962.164 964 49.4488 0.0943352 0.313374751
13 122.047 1106.74 1111 24.1718 1076.95 1078 31.0666 124.512 1007.81 1010 40.3218 980.5 980.5 53.918 0.00868613 0
14 156.373 1130.61 1123.5 48.5969 1072.59 1074 30.1768 206.133 1064.79 1051.5 66.9103 981.135 985 47.158 0.119986 0.398584864
15 9656.81 9194.09 9254 575.081 1066.65 1065 25.1977 69218.7 43667.5 43827 2951.21 982.942 976.5 49.9083 0.855389 2.841540751
16 342.045 1272.41 1260 71.1214 1063.27 1062.5 26.8742 420.525 1195.48 1204 72.5123 977.346 979 47.9889 0.0897085 0.298005187
17 999.156 1814.19 1813 93.3805 1058.38 1060 28.8198 708.826 1354.77 1361 70.686 966.847 964 53.6969 -0.149094 -0.495279547
18 134.879 1104.89 1113 48.3654 1063.7 1064 28.494 175.999 1032.36 1034 85.9682 968.667 966 53.9076 0.115567 0
19 106.933 1077.3 1078 32.5444 1057.61 1057 31.6758 138.464 997.815 989 50.7778 959.222 950 64.8914 0.112226 0
20 395.252 1319.19 1318 51.1754 1058.51 1056 28.9068 744.125 1376.44 1371 87.3258 953.778 954 53.7482 0.274772 0.912772826

Total number of rows: 16281

Table truncated, full table size 1960 Kbytes.




Supplementary data files not provided
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