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Sample GSM15087 Query DataSets for GSM15087
Status Public on Jan 15, 2004
Title Day 16 Mouse #92 - 2nd replicate
Sample type RNA
 
Channel 1
Source name Total RNA from the kidney of control mice was labeled with Cyanine-3 (green).
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name Total RNA from the kidney of anti-GBM glomerulonephritis mice was labeled with Cyanine-5 (red).
Organism Mus musculus
Extracted molecule total RNA
 
 
Description Control total RNA was pooled from the kidney of five normal BALB/c mice.
Total RNA was extracted from the kidney of BALB/c mice injected with anti-GBM antibody for 16 day.
 
Submission date Jan 12, 2004
Last update date May 28, 2005
Contact name Sangdun Choi
E-mail(s) schoi@caltech.edu
Phone 626-395-8732
Fax 626-796-7066
Organization name California Institute of Technology
Department Biology
Lab Simon Lab
Street address 1200 E. California Blvd
City Pasadena
State/province CA
ZIP/Postal code 91125
Country USA
 
Platform ID GPL254
Series (2)
GSE958 Day 16 anti-GBM mouse
GSE969 Anti-GBM antibody effect on kidney

Data table header descriptions
ID_REF Feature number which correspond to the order of genes on the array
G_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
G_MEAN Green Channel Mean Raw Intensity
G_MEDIAN Green Channel Median Raw Intensity
G_SD Green Channel Standard Deviation
G_BG_MEAN Green Channel Mean Background Level
G_BG_MEDIAN Green Channel Median Background Level
G_BG_SD Green Channel Background Standard Deviation
R_PROCESSED Processed Signal, after dye normalization and background subtraction, used for computing the log ratio
R_MEAN Red Channel Mean Raw Intensity
R_MEDIAN Red Channel Median Raw Intensity
R_SD Red Channel Standard Deviation
R_BG_MEAN Red Channel Mean Background Level
R_BG_MEDIAN Red Channel Median Background Level
R_BG_SD Red Channel Background Standard Deviation
RATIO Log Ratio (base 10)
VALUE Processed Ratio (base 2) after removing saturated spots, spot below 2.6XSD of background, and nonuniform spots.

Data table
ID_REF G_PROCESSED G_MEAN G_MEDIAN G_SD G_BG_MEAN G_BG_MEDIAN G_BG_SD R_PROCESSED R_MEAN R_MEDIAN R_SD R_BG_MEAN R_BG_MEDIAN R_BG_SD RATIO VALUE
1 98173.3 65516.6 65516 0.640513 1136.85 1132 39.1703 77578 65516.8 65517 0.50637 644.617 638 42.3157 -0.102255 0
2 35.9992 1096.63 1097 29.3666 1127.41 1129 25.2151 51.4965 618.926 609 23.7761 621.517 621 25.5893 0.155485 0
3 42.9352 1082.96 1082.5 25.87 1121.24 1123 29.4038 34.5767 602.542 599 25.0269 617.781 617 25.377 0 0
4 117.087 1217.7 1213 30.6002 1182.92 1188 42.3461 84.6831 685.778 683 34.7965 664.305 668 40.8794 -0.140712 0
5 66.6946 1098.79 1105 53.8175 1171.23 1172 37.9793 35.6924 632.536 628 60.0651 655.17 658 34.4205 0 0
6 131.52 1239.4 1225 40.831 1194.48 1190 33.1657 97.7529 709.68 706 28.8267 678.045 679 27.9588 -0.128863 0
7 46.2292 1124.33 1124 33.0489 1158.17 1153 32.1544 45.4727 636.63 631 38.9093 643.692 644 28.4423 0 0
8 21064.4 14773.5 14848.5 1168.5 1154.3 1152 28.621 32437.4 28054 28191.5 2373.54 646.02 645.5 28.4058 0.187496 0.62284823
9 267.679 1282.13 1298 56.3861 1148.3 1147.5 30.1031 229.058 777.783 772 35.1955 637.301 635 28.9383 -0.0676682 -0.224788895
10 328.871 1311.11 1309 31.566 1140.04 1137 25.202 320.005 847.519 846 40.3279 628.72 626 28.5658 -0.0118686 -0.039426636
11 62.7421 1134.82 1134 24.6589 1139.5 1138 27.0884 71.8415 640.364 640.5 9.13155 628.367 629 25.3669 0.0588163 0
12 72739.5 48760 48406 8711.05 1147.7 1149 28.1834 74738.4 63234.8 65517 3549.15 639.507 640 31.5566 0.0117736 0
13 217.443 1246.42 1245 36.2659 1146.66 1146 29.5758 265.486 797.462 794.5 34.6736 628.342 627 26.5047 0.0866964 0.287999207
14 198.862 1235.33 1232 36.1258 1146.12 1141.5 33.6159 193.857 738.556 742 32.0124 629.136 625 29.0348 -0.01107 -0.036773744
15 9822.19 7461.24 7188 901.452 1142.33 1140 27.6741 57901.7 49629.8 47517 7686.61 632.686 631 28.5146 0.770483 2.559489124
16 547.724 1449.96 1435 103.51 1143.05 1139.5 27.7398 690.378 1168.44 1134 156.595 629.135 628 26.8917 0.100526 0.333940144
17 1061.32 1782.11 1756 82.9974 1149.01 1147 28.1776 796.982 1259.3 1237 93.3751 621.983 621 32.0957 -0.124399 -0.413244533
18 156.099 1220.77 1205 69.9573 1161.23 1159.5 40.9215 234.936 805.654 798 144.139 664.287 654 61.6848 0.177549 0.589805011
19 87.8919 1158.63 1162 30.7568 1144.89 1147 24.6977 106.831 662.625 665 24.9483 624.327 619 29.4223 0.0847494 0
20 429.342 1374.81 1367.5 31.1615 1143.9 1142 25.9368 686.897 1161.08 1167 69.6781 626.931 626 26.61 0.204088 0.677965661

Total number of rows: 16281

Table truncated, full table size 1970 Kbytes.




Supplementary data files not provided
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