NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM151694 Query DataSets for GSM151694
Status Public on Dec 18, 2006
Title Col-0 uninoculated, biological replicate 1
Sample type RNA
 
Source name Arabidopsis thaliana Col-0 leaves, uninoculated
Organism Arabidopsis thaliana
Characteristics Genotype: Columbia-0, wild-type (Col-0) Age: 5 week-old Tissue: uninoculated leaves
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the leaves using the Trizol method (Invitrogen) and purified with RNeasy MiniKit (Qiagen). cDNA was synthesized and purified with one-cycle cDNA Synthesis Kit (Affymetrix) and GeneChip Sample Cleanup Module (Affymetrix), respectively.
Label Biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol with GeneChip IVT Labeling Kit and Genechip Sample Cleanup Module (Affymetrix)
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description Gene expression data of wild type Columbia-0 leaves, uninoculated
Data processing The data were analyzed with Affymetrix GeneChip® Operating Software (GCOS, Version 1.4) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
 
Submission date Dec 18, 2006
Last update date Aug 28, 2018
Contact name Li Qun
E-mail(s) qli@sibs.ac.cn
Phone +86 21 54924122
Organization name Institute of plant physiology & ecology, SIBS, CAS
Department National Key Laboratory of Plant Molecular Genetics
Street address 300 Fenglin Road
City Shanghai
State/province Shanghai
ZIP/Postal code 200032
Country China
 
Platform ID GPL198
Series (1)
GSE6556 Expression profiling of A. thaliana wild type Columbia-0 and mutant gh3.5-1D in response to pathogen Pst DC3000(avrRpt2)
Relations
Reanalyzed by GSE118579
Reanalyzed by GSE119083

Data table header descriptions
ID_REF Affymetrix Probe Set ID
VALUE Affymetrix GeneChip Operating Software (GCOS, Version 1.4, Affymetrix) calculated Signal intensity
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
244901_at 47.3 P 0.000244
244902_at 45.7 P 0.000244
244903_at 92.2 P 0.001953
244904_at 25.2 A 0.149658
244905_at 10.9 A 0.246094
244906_at 69.1 P 0.00415
244907_at 9.3 A 0.432373
244908_at 0.8 A 0.932373
244909_at 2.3 A 0.828613
244910_s_at 11.8 A 0.095215
244911_at 0.4 A 0.99585
244912_at 65.5 P 0.01416
244913_at 4.4 A 0.5
244914_at 1.6 A 0.828613
244915_s_at 15.1 A 0.601074
244916_at 0.7 A 0.423828
244917_at 1.6 A 0.919434
244918_at 1.9 A 0.696289
244919_at 13.4 P 0.037598
244920_s_at 53.9 P 0.00293

Total number of rows: 22810

Table truncated, full table size 573 Kbytes.




Supplementary file Size Download File type/resource
GSM151694.CEL.gz 3.1 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.