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Sample GSM1548819 Query DataSets for GSM1548819
Status Public on Nov 20, 2014
Title EnglishCockerSpaniel-Lingaas_481_ARRAY106890
Sample type genomic
 
Source name blood
Organism Canis lupus familiaris
Characteristics tissue: blood
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from blood using the Puregene DNA purification Kit (Gentra Systems) protocol.
Label Biotin
Label protocol As per manufacturer (Affymetrix)
 
Hybridization protocol DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
Scan protocol The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
Data processing The array image was acquired using Affymetrix GeneChip® Operating Software.
Genotype Call (SNP call): AA, AB, BB, NC, and NoCall; 'Signal' = Summarized signal
 
Submission date Nov 18, 2014
Last update date Nov 20, 2014
Contact name Hyun Ji Noh
E-mail(s) noh@broadinstitute.org
Organization name Broad Institute
Department Genome Sequencing and Analysis
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02141
Country USA
 
Platform ID GPL18091
Series (1)
GSE63439 Diverse dog breeds genotyped on Affymetrix Canine v2 Arrays

Supplementary file Size Download File type/resource
GSM1548819_ASSAI_p_DOGNEW_0001_correct_DogSNPs520431_A10_106890.CEL.gz 11.2 Mb (ftp)(http) CEL
GSM1548819_ASSAI_p_DOGNEW_0001_correct_DogSNPs520431_A10_106890.brlmm-p.chp.gz 433.3 Kb (ftp)(http) CHP
GSM1548819_ASSAI_p_DOGNEW_0001_correct_DogSNPs520431_A10_106890.brlmm-p.chp.txt.gz 1.3 Mb (ftp)(http) TXT
Processed data provided as supplementary file

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