NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE63439 Query DataSets for GSE63439
Status Public on Nov 20, 2014
Title Diverse dog breeds genotyped on Affymetrix Canine v2 Arrays
Platform organism Canis lupus familiaris
Sample organisms Canis lupus; Canis lupus familiaris
Experiment type SNP genotyping by SNP array
Summary Diverse dataset of 1247 dogs from many breeds and wolves used to investigate the origins of dog domestication
 
Overall design DNA for 1228 dogs from 35 breeds and 19 wolves was extracted from whole blood samples and genotyped on the Affymetrix Canine v2 Arrays. Genotypes were called using Affymetrix's snp5-probeset-genotype software and the BRLMM-P calling algorithm. The included breed designations are owner reported. 
 
Contributor(s) Lindblad-Toh K
Citation(s) 22615366
Submission date Nov 18, 2014
Last update date Mar 09, 2015
Contact name Hyun Ji Noh
E-mail(s) noh@broadinstitute.org
Organization name Broad Institute
Department Genome Sequencing and Analysis
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02141
Country USA
 
Platforms (1)
GPL18091 [DogSty06m520431P] Affymetrix version 2 canine SNP array
Samples (1239)
GSM1548755 Boxer-BI_03208_ARRAY127246
GSM1548756 Boxer-BI_03228_ARRAY127262
GSM1548757 Boxer-BI_03301_ARRAY127278
Relations
BioProject PRJNA268030

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE63439_RAW.tar 15.6 Gb (http)(custom) TAR (of CEL, CHP, TXT)
Processed data provided as supplementary file
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap