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Status
Public on Jan 20, 2007
Title
NRMRL test replicate05, EPA72 batch052005 430_2 chip
Sample type
RNA
Source name
Neonatal small intestinal tissue, 24 hour infection
Organism
Mus musculus Characteristics
Swiss Webster neonatal mouse, 4-6 days old
Extracted molecule
total RNA
Extraction protocol
TriZol procedure
Label
Strepavidin Phycoerythrin (SAPE)
Label protocol
Affymetrix SOP, EukGE-WS2
Hybridization protocol
GCOS software, EukGE-WS2
Scan protocol
GCOS software with 3000 Scanner
Description
None
Data processing
GCOS software, target signal scaling 500; normalization 1; Alpha1 0.05; Alpha2 0.065, Tau 0.015; Gamma1L and 1H 0.0045; Gamma2L and 2H 0.06; and Pertubation 1.1.
Submission date
Jan 17, 2007
Last update date
Aug 28, 2018
Contact name
Samuel Hayes
E-mail(s)
hayes.sam@epa.gov Phone
513-569-7514
Organization name
United States Environmental Protection Agency
Department
MS-387
Lab
NRMRL/WSWRD
Street address
26 W. Martin Luther King Dr.
City
Cincinnati
State/province
OH
ZIP/Postal code
45268
Country
USA
Platform ID
GPL1261 Series (1)
GSE6765 Aeromonas caviae infection, 24 hours
Relations Reanalyzed by
GSE119085
Data table header descriptions ID_REF EPA05020_60872_M430-2_EPA0908N_Stat Pairs Total probe sets
EPA05020_60872_M430-2_EPA0908N_Stat Pairs Used Probe sets used
VALUE Normalized intensity value
ABS_CALL present versus absent call
DETECTION P-VALUE Detection p-value
Data table ID_REF EPA05020_60872_M430-2_EPA0908N_Stat Pairs EPA05020_60872_M430-2_EPA0908N_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
20
20
254.1
P
0.002867
AFFX-BioB-M_at
20
20
345.4
P
0.001593
AFFX-BioB-3_at
20
20
214.5
P
0.002275
AFFX-BioC-5_at
20
20
910.8
P
0.000060
AFFX-BioC-3_at
20
20
1120.0
P
0.000147
AFFX-BioDn-5_at
20
20
1240.8
P
0.000044
AFFX-BioDn-3_at
20
20
4477.1
P
0.000195
AFFX-CreX-5_at
20
20
12900.1
P
0.000052
AFFX-CreX-3_at
20
20
15096.7
P
0.000044
AFFX-DapX-5_at
20
20
12.1
A
0.672921
AFFX-DapX-M_at
20
20
39.1
A
0.195266
AFFX-DapX-3_at
20
20
9.9
A
0.749204
AFFX-LysX-5_at
20
20
1.8
A
0.927300
AFFX-LysX-M_at
20
20
7.0
A
0.794268
AFFX-LysX-3_at
20
20
27.7
A
0.123572
AFFX-PheX-5_at
20
20
3.4
A
0.949771
AFFX-PheX-M_at
20
20
5.5
A
0.852061
AFFX-PheX-3_at
20
20
24.4
A
0.514890
AFFX-ThrX-5_at
20
20
8.8
A
0.760937
AFFX-ThrX-M_at
20
20
37.7
A
0.382599
45101 1500 Kbytes .Supplementary file Size Download File type/resource GSM155995.CEL.gz
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