|
| Status |
Public on Sep 02, 2015 |
| Title |
S9_Tumor |
| Sample type |
genomic |
| |
|
| Source name |
Tumor colorectal tissue
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
age of surgery: 59
tissue: Tumor colorectal tissue
tumor stage: I
|
| Treatment protocol |
n.a.
|
| Growth protocol |
n.a.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Phenol/chloroform/isoamylic acid protocol
|
| Label |
Cy3 and Cy5
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina GoldenGate Methylation Cancer Panel I using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
T09
|
| Data processing |
BeadStudio software v3.2 and beta-value correction using metillumi R package
|
| |
|
| Submission date |
Dec 12, 2014 |
| Last update date |
Sep 02, 2015 |
| Contact name |
Jordi Camps |
| E-mail(s) |
jcamps@clinic.ub.es
|
| Organization name |
IDIBAPS / Hospital Clinic
|
| Department |
Gastroenterology
|
| Lab |
Gastrointestinal and Pancreatic Oncology
|
| Street address |
c/Rosselló 149-153 4th floor, Center Esther Koplowitz
|
| City |
Barcelona |
| State/province |
Catalonia |
| ZIP/Postal code |
08036 |
| Country |
Spain |
| |
|
| Platform ID |
GPL9183 |
| Series (2) |
| GSE64112 |
Patterns of somatic uniparental disomy identify novel tumor suppressor genes in colorectal cancer |
| GSE64114 |
Patterns of somatic uniparental disomy identify novel tumor suppressor genes in colorectal cancer |
|
