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GEO accession:
Sample GSM157591
Query DataSets for GSM157591
Status
Public on Jan 22, 2007
Title
WT_D_N1000_r1
Sample type
RNA
Source name
Escherichia coli
Organism
Escherichia coli
Characteristics
wild-type 1.0 ug/ml norfloxacin
Extracted molecule
total RNA
Extraction protocol
RNAEasy with RNAProtect(Qiagen)
Label
biotin
Label protocol
Biotinylated cDNA was prepared according to the standard Affymetrix E. coli protocol
Hybridization protocol
Following fragmentation, cDNA was hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
Description
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
Data processing
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
Submission date
Jan 22, 2007
Last update date
Jan 22, 2007
Contact name
Timothy S Gardner
E-mail(s)
tgardner@bu.edu
URL
http://gardnerlab.bu.edu/
Organization name
Boston University
Department
Biomedical Engineering
Street address
44 Cummington St.
City
Boston
State/province
MA
ZIP/Postal code
02215
Country
USA
Platform ID
GPL199
Series (1)
GSE6836
Large-Scale Mapping and Validation of E. coli Transcriptional Regulation from a Compendium of Expression Profiles.
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
ompX_b0814_at
835
P
0.000327
pykF_b1676_at
1995
P
0.001886
fimD_b4317_at
21
A
0.769849
slyB_b1641_at
4838.5
P
0.000494
IG_1234_1928427_1928480_rev_at
3347.9
P
0.000491
dmsB_b0895_at
92.4
A
0.324781
IG_69_127588_127911_fwd_f_at
21710.9
P
0.000147
IG_2143_3432799_3432843_fwd_at
153.4
A
0.165039
IG_1827_2940590_2940939_rev_at
163.5
P
0.042142
IG_941_1502890_1504195_fwd_at
4.3
A
0.96798
adiA_b4117_at
128.5
A
0.181343
b1810_at
410.1
P
0.001571
b1675_at
239.4
A
0.110449
cysK_b2414_at
1473.3
P
0.000403
yjeS_b4166_at
446.4
P
0.006227
IG_2356_3818804_3825086_rev_at
46.6
P
0.033356
yrfD_b3395_at
23
A
0.54522
IG_1746_2797635_2798154_fwd_at
10
A
0.780723
IG_1180_1863661_1863749_rev_at
92.8
P
0.003815
ycbP_b0937_at
166.5
A
0.413046
Total number of rows:
7312
Table truncated, full table size
259 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM157591.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
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