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GEO accession:
Sample GSM157612
Query DataSets for GSM157612
Status
Public on Jan 22, 2007
Title
T48_N0025_r1
Sample type
RNA
Source name
Escherichia coli
Organism
Escherichia coli
Characteristics
cells 48 min after treatment by norfloxacin
Extracted molecule
total RNA
Extraction protocol
RNAEasy with RNAProtect(Qiagen)
Label
biotin
Label protocol
Biotinylated cDNA was prepared according to the standard Affymetrix E. coli protocol
Hybridization protocol
Following fragmentation, cDNA was hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
Description
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
Data processing
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
Submission date
Jan 22, 2007
Last update date
Jan 22, 2007
Contact name
Timothy S Gardner
E-mail(s)
tgardner@bu.edu
URL
http://gardnerlab.bu.edu/
Organization name
Boston University
Department
Biomedical Engineering
Street address
44 Cummington St.
City
Boston
State/province
MA
ZIP/Postal code
02215
Country
USA
Platform ID
GPL199
Series (1)
GSE6836
Large-Scale Mapping and Validation of E. coli Transcriptional Regulation from a Compendium of Expression Profiles.
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
ompX_b0814_at
4647.3
P
0.000327
pykF_b1676_at
494.2
P
0.015454
fimD_b4317_at
43
A
0.522646
slyB_b1641_at
1441
P
0.000893
IG_1234_1928427_1928480_rev_at
11808.8
P
0.000491
dmsB_b0895_at
96.3
A
0.24776
IG_69_127588_127911_fwd_f_at
28340.1
P
0.000147
IG_2143_3432799_3432843_fwd_at
208
A
0.091797
IG_1827_2940590_2940939_rev_at
141.5
P
0.023995
IG_941_1502890_1504195_fwd_at
4
A
0.957858
adiA_b4117_at
103.2
A
0.088557
b1810_at
917.1
P
0.002693
b1675_at
123.1
A
0.364945
cysK_b2414_at
643.7
P
0.001081
yjeS_b4166_at
2336
P
0.000403
IG_2356_3818804_3825086_rev_at
127.3
P
0.000108
yrfD_b3395_at
36.3
A
0.54522
IG_1746_2797635_2798154_fwd_at
161.2
P
0.006638
IG_1180_1863661_1863749_rev_at
303.7
P
0.001165
ycbP_b0937_at
102.7
A
0.165268
Total number of rows:
7312
Table truncated, full table size
259 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM157612.CEL.gz
1.9 Mb
(ftp)
(http)
CEL
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