|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Jan 22, 2007 |
Title |
ik_L2_T4_r1 |
Sample type |
RNA |
|
|
Source name |
Escherichia coli
|
Organism |
Escherichia coli |
Characteristics |
K12 EMG2 on LB with 0.2 percent glucose, 4 hours post-incubation
|
Extracted molecule |
total RNA |
Extraction protocol |
RNAEasy with RNAProtect(Qiagen)
|
Label |
biotin
|
Label protocol |
Biotinylated cDNA was prepared according to the standard Affymetrix E. coli protocol
|
|
|
Hybridization protocol |
Following fragmentation, cDNA was hybridized for 16 hr at 45C. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
|
Scan protocol |
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
|
Description |
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
|
Data processing |
GeneChips were washed and stained with an FS450 fluidics machine and scanned using a GeneChip Scanner 3000
|
|
|
Submission date |
Jan 22, 2007 |
Last update date |
Jan 22, 2007 |
Contact name |
Timothy S Gardner |
E-mail(s) |
tgardner@bu.edu
|
URL |
http://gardnerlab.bu.edu/
|
Organization name |
Boston University
|
Department |
Biomedical Engineering
|
Street address |
44 Cummington St.
|
City |
Boston |
State/province |
MA |
ZIP/Postal code |
02215 |
Country |
USA |
|
|
Platform ID |
GPL199 |
Series (1) |
GSE6836 |
Large-Scale Mapping and Validation of E. coli Transcriptional Regulation from a Compendium of Expression Profiles. |
|
Data table header descriptions |
ID_REF |
|
VALUE |
MAS5-calculated Signal intensity |
ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
Data table |
ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
ompX_b0814_at |
6228.5 |
P |
0.000327 |
pykF_b1676_at |
2486.6 |
P |
0.000403 |
fimD_b4317_at |
80 |
A |
0.095723 |
slyB_b1641_at |
5518.1 |
P |
0.000327 |
IG_1234_1928427_1928480_rev_at |
158.5 |
P |
0.000491 |
dmsB_b0895_at |
112.1 |
P |
0.005297 |
IG_69_127588_127911_fwd_f_at |
10210.2 |
P |
0.000147 |
IG_2143_3432799_3432843_fwd_at |
563 |
P |
0.004883 |
IG_1827_2940590_2940939_rev_at |
76.8 |
P |
0.010972 |
IG_941_1502890_1504195_fwd_at |
1.2 |
A |
0.982268 |
adiA_b4117_at |
143.8 |
P |
0.012921 |
b1810_at |
206.4 |
P |
0.001305 |
b1675_at |
214.1 |
P |
0.005504 |
cysK_b2414_at |
1382.4 |
P |
0.000327 |
yjeS_b4166_at |
338.3 |
P |
0.006227 |
IG_2356_3818804_3825086_rev_at |
112.2 |
P |
0 |
yrfD_b3395_at |
130.7 |
A |
0.077818 |
IG_1746_2797635_2798154_fwd_at |
26.9 |
A |
0.140202 |
IG_1180_1863661_1863749_rev_at |
162.5 |
P |
0.001165 |
ycbP_b0937_at |
116.8 |
A |
0.198363 |
Total number of rows: 7312
Table truncated, full table size 258 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM157660.CEL.gz |
2.1 Mb |
(ftp)(http) |
CEL |
|
|
|
|
|