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Sample GSM1586566 Query DataSets for GSM1586566
Status Public on Jan 23, 2015
Title Prostate-3
Sample type RNA
 
Source name radical prostatectomy
Organism Homo sapiens
Characteristics diagnosis: prostate cancer
time to first recurrence: 628
positive lymph nodes: 0
d'amico risk classification: I
stephensen risk classification: L
gleason score: 3+4
time from rt to second biochemical recurrence (days): --
time from rt to last follow up-censored (days): 1770
Extracted molecule total RNA
Extraction protocol Total RNA was exctracted by Qiagen miRNeasy FFPE kit
Label N/A
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol Performed according to manufacturer's protocol
Scan protocol Performed according to manufacturer's protocol
Data processing Data processed using nSolver; a geometric mean was used to normalize miRNA expression
 
Submission date Jan 16, 2015
Last update date Jan 23, 2015
Contact name Erica Hlavin Bell
E-mail(s) erica.bell@osumc.edu
Organization name The Ohio State University
Street address 410 W 12th Ave
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Platform ID GPL17537
Series (1)
GSE65061 A Novel miRNA-Based Predictive Model for Biochemical Failure Following Post-Prostatectomy Salvage Radiation Therapy

Data table header descriptions
ID_REF
VALUE Normalized data

Data table
ID_REF VALUE
hsa-let-7a-5p 10487.82379
hsa-let-7b-5p 2920.164734
hsa-let-7c 1469.859704
hsa-let-7d-5p 257.4698817
hsa-let-7e-5p 409.0186095
hsa-let-7f-5p 831.0736687
hsa-let-7g-5p 2367.745178
hsa-let-7i-5p 325.9112426
hsa-miR-1 259.0994379
hsa-miR-100-5p 818.037219
hsa-miR-101-3p 27.70245562
hsa-miR-103a-3p 17.92511835
hsa-miR-105-5p 13.03644971
hsa-miR-106a-5p+hsa-miR-17-5p 609.4540237
hsa-miR-106b-5p 285.1723373
hsa-miR-107 158.0669527
hsa-miR-10a-5p 50.51624261
hsa-miR-10b-5p 70.07091717
hsa-miR-1178 83.10736687
hsa-miR-1179 24.4433432

Total number of rows: 800

Table truncated, full table size 20 Kbytes.




Supplementary file Size Download File type/resource
GSM1586566_4.RCC.gz 6.9 Kb (ftp)(http) RCC
Processed data included within Sample table

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