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Sample GSM1586569 Query DataSets for GSM1586569
Status Public on Jan 23, 2015
Title Prostate-6
Sample type RNA
 
Source name radical prostatectomy
Organism Homo sapiens
Characteristics diagnosis: prostate cancer
time to first recurrence: 312
positive lymph nodes: 0
d'amico risk classification: H
stephensen risk classification: L
gleason score: 3+4
time from rt to second biochemical recurrence (days): --
time from rt to last follow up-censored (days): 2269
Extracted molecule total RNA
Extraction protocol Total RNA was exctracted by Qiagen miRNeasy FFPE kit
Label N/A
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol Performed according to manufacturer's protocol
Scan protocol Performed according to manufacturer's protocol
Data processing Data processed using nSolver; a geometric mean was used to normalize miRNA expression
 
Submission date Jan 16, 2015
Last update date Jan 23, 2015
Contact name Erica Hlavin Bell
E-mail(s) erica.bell@osumc.edu
Organization name The Ohio State University
Street address 410 W 12th Ave
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Platform ID GPL17537
Series (1)
GSE65061 A Novel miRNA-Based Predictive Model for Biochemical Failure Following Post-Prostatectomy Salvage Radiation Therapy

Data table header descriptions
ID_REF
VALUE Normalized data

Data table
ID_REF VALUE
hsa-let-7a-5p 7877.783634
hsa-let-7b-5p 2523.902423
hsa-let-7c 1186.6597
hsa-let-7d-5p 230.7848519
hsa-let-7e-5p 211.1435879
hsa-let-7f-5p 617.0630438
hsa-let-7g-5p 2160.539039
hsa-let-7i-5p 278.2512399
hsa-miR-1 99.84309197
hsa-miR-100-5p 438.6548959
hsa-miR-101-3p 9.820631997
hsa-miR-103a-3p 22.91480799
hsa-miR-105-5p 24.55157999
hsa-miR-106a-5p+hsa-miR-17-5p 386.2781919
hsa-miR-106b-5p 247.1525719
hsa-miR-107 140.762392
hsa-miR-10a-5p 40.91929999
hsa-miR-10b-5p 36.00898399
hsa-miR-1178 76.92828398
hsa-miR-1179 29.46189599

Total number of rows: 800

Table truncated, full table size 20 Kbytes.




Supplementary file Size Download File type/resource
GSM1586569_8.RCC.gz 6.9 Kb (ftp)(http) RCC
Processed data included within Sample table

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