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Sample GSM1586575 Query DataSets for GSM1586575
Status Public on Jan 23, 2015
Title Prostate-12
Sample type RNA
 
Source name radical prostatectomy
Organism Homo sapiens
Characteristics diagnosis: prostate cancer
time to first recurrence: 2744
positive lymph nodes: 0
d'amico risk classification: H
stephensen risk classification: L
gleason score: 4+5
time from rt to second biochemical recurrence (days): 150
time from rt to last follow up-censored (days): --
Extracted molecule total RNA
Extraction protocol Total RNA was exctracted by Qiagen miRNeasy FFPE kit
Label N/A
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol Performed according to manufacturer's protocol
Scan protocol Performed according to manufacturer's protocol
Data processing Data processed using nSolver; a geometric mean was used to normalize miRNA expression
 
Submission date Jan 16, 2015
Last update date Jan 23, 2015
Contact name Erica Hlavin Bell
E-mail(s) erica.bell@osumc.edu
Organization name The Ohio State University
Street address 410 W 12th Ave
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Platform ID GPL17537
Series (1)
GSE65061 A Novel miRNA-Based Predictive Model for Biochemical Failure Following Post-Prostatectomy Salvage Radiation Therapy

Data table header descriptions
ID_REF
VALUE Normalized data

Data table
ID_REF VALUE
hsa-let-7a-5p 1566.816138
hsa-let-7b-5p 796.2126587
hsa-let-7c 193.2328967
hsa-let-7d-5p 66.35105489
hsa-let-7e-5p 81.48375162
hsa-let-7f-5p 123.389681
hsa-let-7g-5p 288.6852915
hsa-let-7i-5p 80.31969803
hsa-miR-1 33.75755424
hsa-miR-100-5p 144.3426457
hsa-miR-101-3p 24.44512549
hsa-miR-103a-3p 22.1170183
hsa-miR-105-5p 30.26539346
hsa-miR-106a-5p+hsa-miR-17-5p 105.9288771
hsa-miR-106b-5p 84.97591241
hsa-miR-107 47.72619738
hsa-miR-10a-5p 45.39809019
hsa-miR-10b-5p 37.24971503
hsa-miR-1178 33.75755424
hsa-miR-1179 36.08566143

Total number of rows: 800

Table truncated, full table size 20 Kbytes.




Supplementary file Size Download File type/resource
GSM1586575_19.RCC.gz 6.9 Kb (ftp)(http) RCC
Processed data included within Sample table

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