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Sample GSM1586579 Query DataSets for GSM1586579
Status Public on Jan 23, 2015
Title Prostate-16
Sample type RNA
 
Source name radical prostatectomy
Organism Homo sapiens
Characteristics diagnosis: prostate cancer
time to first recurrence: 799
positive lymph nodes: 0
d'amico risk classification: H
stephensen risk classification: L
gleason score: 4+3
time from rt to second biochemical recurrence (days): --
time from rt to last follow up-censored (days): 2217
Extracted molecule total RNA
Extraction protocol Total RNA was exctracted by Qiagen miRNeasy FFPE kit
Label N/A
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol Performed according to manufacturer's protocol
Scan protocol Performed according to manufacturer's protocol
Data processing Data processed using nSolver; a geometric mean was used to normalize miRNA expression
 
Submission date Jan 16, 2015
Last update date Jan 23, 2015
Contact name Erica Hlavin Bell
E-mail(s) erica.bell@osumc.edu
Organization name The Ohio State University
Street address 410 W 12th Ave
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Platform ID GPL17537
Series (1)
GSE65061 A Novel miRNA-Based Predictive Model for Biochemical Failure Following Post-Prostatectomy Salvage Radiation Therapy

Data table header descriptions
ID_REF
VALUE Normalized data

Data table
ID_REF VALUE
hsa-let-7a-5p 5001.118162
hsa-let-7b-5p 2736.460881
hsa-let-7c 698.2693282
hsa-let-7d-5p 176.1400107
hsa-let-7e-5p 81.77929069
hsa-let-7f-5p 547.2921762
hsa-let-7g-5p 1214.107931
hsa-let-7i-5p 150.9771521
hsa-miR-1 37.74428801
hsa-miR-100-5p 427.7685975
hsa-miR-101-3p 12.58142934
hsa-miR-103a-3p 18.87214401
hsa-miR-105-5p 62.90714669
hsa-miR-106a-5p+hsa-miR-17-5p 452.9314562
hsa-miR-106b-5p 195.0121547
hsa-miR-107 62.90714669
hsa-miR-10a-5p 56.61643202
hsa-miR-10b-5p 50.32571735
hsa-miR-1178 50.32571735
hsa-miR-1179 37.74428801

Total number of rows: 800

Table truncated, full table size 20 Kbytes.




Supplementary file Size Download File type/resource
GSM1586579_24.RCC.gz 6.6 Kb (ftp)(http) RCC
Processed data included within Sample table

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