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Sample GSM1586582 Query DataSets for GSM1586582
Status Public on Jan 23, 2015
Title Prostate-19
Sample type RNA
 
Source name radical prostatectomy
Organism Homo sapiens
Characteristics diagnosis: prostate cancer
time to first recurrence: 666
positive lymph nodes: 0
d'amico risk classification: H
stephensen risk classification: I
gleason score: 4+3
time from rt to second biochemical recurrence (days): --
time from rt to last follow up-censored (days): 994
Extracted molecule total RNA
Extraction protocol Total RNA was exctracted by Qiagen miRNeasy FFPE kit
Label N/A
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol Performed according to manufacturer's protocol
Scan protocol Performed according to manufacturer's protocol
Data processing Data processed using nSolver; a geometric mean was used to normalize miRNA expression
 
Submission date Jan 16, 2015
Last update date Jan 23, 2015
Contact name Erica Hlavin Bell
E-mail(s) erica.bell@osumc.edu
Organization name The Ohio State University
Street address 410 W 12th Ave
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Platform ID GPL17537
Series (1)
GSE65061 A Novel miRNA-Based Predictive Model for Biochemical Failure Following Post-Prostatectomy Salvage Radiation Therapy

Data table header descriptions
ID_REF
VALUE Normalized data

Data table
ID_REF VALUE
hsa-let-7a-5p 8987.598204
hsa-let-7b-5p 4794.109973
hsa-let-7c 2234.871596
hsa-let-7d-5p 330.5747569
hsa-let-7e-5p 451.6303017
hsa-let-7f-5p 495.0861383
hsa-let-7g-5p 2224.007637
hsa-let-7i-5p 360.0626461
hsa-miR-1 86.91167319
hsa-miR-100-5p 1041.388084
hsa-miR-101-3p 13.96794748
hsa-miR-103a-3p 18.62392997
hsa-miR-105-5p 12.41595331
hsa-miR-106a-5p+hsa-miR-17-5p 386.4465469
hsa-miR-106b-5p 148.9914398
hsa-miR-107 122.607539
hsa-miR-10a-5p 48.11181909
hsa-miR-10b-5p 65.18375489
hsa-miR-1178 66.73574906
hsa-miR-1179 32.59187745

Total number of rows: 800

Table truncated, full table size 20 Kbytes.




Supplementary file Size Download File type/resource
GSM1586582_27.RCC.gz 6.9 Kb (ftp)(http) RCC
Processed data included within Sample table

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