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Sample GSM1586589 Query DataSets for GSM1586589
Status Public on Jan 23, 2015
Title Prostate-26
Sample type RNA
 
Source name radical prostatectomy
Organism Homo sapiens
Characteristics diagnosis: prostate cancer
time to first recurrence: 1336
positive lymph nodes: 0
d'amico risk classification: H
stephensen risk classification: H+
gleason score: 4+4
time from rt to second biochemical recurrence (days): --
time from rt to last follow up-censored (days): 1393
Extracted molecule total RNA
Extraction protocol Total RNA was exctracted by Qiagen miRNeasy FFPE kit
Label N/A
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol Performed according to manufacturer's protocol
Scan protocol Performed according to manufacturer's protocol
Data processing Data processed using nSolver; a geometric mean was used to normalize miRNA expression
 
Submission date Jan 16, 2015
Last update date Jan 23, 2015
Contact name Erica Hlavin Bell
E-mail(s) erica.bell@osumc.edu
Organization name The Ohio State University
Street address 410 W 12th Ave
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Platform ID GPL17537
Series (1)
GSE65061 A Novel miRNA-Based Predictive Model for Biochemical Failure Following Post-Prostatectomy Salvage Radiation Therapy

Data table header descriptions
ID_REF
VALUE Normalized data

Data table
ID_REF VALUE
hsa-let-7a-5p 4168.899048
hsa-let-7b-5p 1815.590329
hsa-let-7c 532.4466411
hsa-let-7d-5p 81.1849334
hsa-let-7e-5p 55.88053857
hsa-let-7f-5p 257.2613474
hsa-let-7g-5p 1097.578126
hsa-let-7i-5p 89.61973168
hsa-miR-1 24.25004504
hsa-miR-100-5p 303.6527379
hsa-miR-101-3p 10.54349784
hsa-miR-103a-3p 14.76089698
hsa-miR-105-5p 30.57614375
hsa-miR-106a-5p+hsa-miR-17-5p 335.2832314
hsa-miR-106b-5p 187.6742616
hsa-miR-107 87.51103211
hsa-miR-10a-5p 34.79354289
hsa-miR-10b-5p 23.19569526
hsa-miR-1178 61.1522875
hsa-miR-1179 18.97829612

Total number of rows: 800

Table truncated, full table size 20 Kbytes.




Supplementary file Size Download File type/resource
GSM1586589_34.RCC.gz 7.0 Kb (ftp)(http) RCC
Processed data included within Sample table

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