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Sample GSM1586590 Query DataSets for GSM1586590
Status Public on Jan 23, 2015
Title Prostate-27
Sample type RNA
 
Source name radical prostatectomy
Organism Homo sapiens
Characteristics diagnosis: prostate cancer
time to first recurrence: 1913
positive lymph nodes: 0
d'amico risk classification: I
stephensen risk classification: L
gleason score: 3+4
time from rt to second biochemical recurrence (days): 557
time from rt to last follow up-censored (days): --
Extracted molecule total RNA
Extraction protocol Total RNA was exctracted by Qiagen miRNeasy FFPE kit
Label N/A
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol Performed according to manufacturer's protocol
Scan protocol Performed according to manufacturer's protocol
Data processing Data processed using nSolver; a geometric mean was used to normalize miRNA expression
 
Submission date Jan 16, 2015
Last update date Jan 23, 2015
Contact name Erica Hlavin Bell
E-mail(s) erica.bell@osumc.edu
Organization name The Ohio State University
Street address 410 W 12th Ave
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Platform ID GPL17537
Series (1)
GSE65061 A Novel miRNA-Based Predictive Model for Biochemical Failure Following Post-Prostatectomy Salvage Radiation Therapy

Data table header descriptions
ID_REF
VALUE Normalized data

Data table
ID_REF VALUE
hsa-let-7a-5p 3455.032868
hsa-let-7b-5p 2068.543374
hsa-let-7c 468.8384184
hsa-let-7d-5p 131.9344293
hsa-let-7e-5p 217.9274056
hsa-let-7f-5p 290.9625361
hsa-let-7g-5p 1198.011738
hsa-let-7i-5p 332.1920452
hsa-miR-1 54.18735489
hsa-miR-100-5p 426.4309233
hsa-miR-101-3p 14.13583171
hsa-miR-103a-3p 18.84777562
hsa-miR-105-5p 17.66978964
hsa-miR-106a-5p+hsa-miR-17-5p 188.4777562
hsa-miR-106b-5p 109.5526958
hsa-miR-107 81.28103234
hsa-miR-10a-5p 44.76346709
hsa-miR-10b-5p 27.09367745
hsa-miR-1178 63.6112427
hsa-miR-1179 27.09367745

Total number of rows: 800

Table truncated, full table size 20 Kbytes.




Supplementary file Size Download File type/resource
GSM1586590_35.RCC.gz 7.0 Kb (ftp)(http) RCC
Processed data included within Sample table

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