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Sample GSM1586602 Query DataSets for GSM1586602
Status Public on Jan 23, 2015
Title Prostate-39
Sample type RNA
 
Source name radical prostatectomy
Organism Homo sapiens
Characteristics diagnosis: prostate cancer
time to first recurrence: 1177
positive lymph nodes: 1
d'amico risk classification: H
stephensen risk classification: L
gleason score: 3+4
time from rt to second biochemical recurrence (days): 844
time from rt to last follow up-censored (days): --
Extracted molecule total RNA
Extraction protocol Total RNA was exctracted by Qiagen miRNeasy FFPE kit
Label N/A
Label protocol nCounter Human miRNA Assay Kit
 
Hybridization protocol Performed according to manufacturer's protocol
Scan protocol Performed according to manufacturer's protocol
Data processing Data processed using nSolver; a geometric mean was used to normalize miRNA expression
 
Submission date Jan 16, 2015
Last update date Jan 23, 2015
Contact name Erica Hlavin Bell
E-mail(s) erica.bell@osumc.edu
Organization name The Ohio State University
Street address 410 W 12th Ave
City Columbus
State/province Ohio
ZIP/Postal code 43210
Country USA
 
Platform ID GPL17537
Series (1)
GSE65061 A Novel miRNA-Based Predictive Model for Biochemical Failure Following Post-Prostatectomy Salvage Radiation Therapy

Data table header descriptions
ID_REF
VALUE Normalized data

Data table
ID_REF VALUE
hsa-let-7a-5p 5186.487083
hsa-let-7b-5p 2645.204552
hsa-let-7c 844.6525438
hsa-let-7d-5p 187.7005653
hsa-let-7e-5p 223.4094533
hsa-let-7f-5p 394.1711871
hsa-let-7g-5p 2074.32015
hsa-let-7i-5p 243.0951224
hsa-miR-1 113.0781454
hsa-miR-100-5p 439.0362003
hsa-miR-101-3p 24.72153787
hsa-miR-103a-3p 15.56541273
hsa-miR-105-5p 24.72153787
hsa-miR-106a-5p+hsa-miR-17-5p 613.4603841
hsa-miR-106b-5p 285.6711042
hsa-miR-107 104.3798266
hsa-miR-10a-5p 35.70888803
hsa-miR-10b-5p 57.2257821
hsa-miR-1178 43.03378814
hsa-miR-1179 13.27638145

Total number of rows: 800

Table truncated, full table size 20 Kbytes.




Supplementary file Size Download File type/resource
GSM1586602_55.RCC.gz 7.2 Kb (ftp)(http) RCC
Processed data included within Sample table

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