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Sample GSM1589551

Query DataSets for GSM1589551

Status

Public on Nov 01, 2015

Title

15-07-030-2 [expression]

Sample type

RNA

Source name

nasal-epithelium

Organism

Homo sapiens

Characteristics

asthma: FALSE
lnige: 3.3673
gender: Female
age: 11
race_hispanic: Yes
race_aa: No
race_white: No
race_asian: No
race_indian_alaska: No
site: New York

Extracted molecule

total RNA

Extraction protocol

AllPrep kit (Qiagen)

Label

cy3

Label protocol

Low Input Quick Amp (Agilent)

Hybridization protocol

Agilent version 6.6

Scan protocol

Agilent GE1_1105_Oct12

Data processing

limma was used to backgroundCorrect(method=”normexp”, offset=8) → normalizeBetweenArrays(method=”quantile”) → keep only probes where half of the samples had a 10% higher signal than the 95th pctile of the control probes

Submission date

Jan 22, 2015

Last update date

Nov 01, 2015

Contact name

David Schwartz

E-mail(s)

DAVID.SCHWARTZ@ucdenver.edu

Phone

303-724-1783

Organization name

University of Colorado, Anschutz Medical Campus

Department

Medicine

Street address

Anschutz Medical Campus

City

Aurora

State/province

ZIP/Postal code

80045

Country

USA

Platform ID

GPL14550

Series (2)

GSE65204	The Nasal Gene Expression and Childhood Atopic Asthma
GSE65205	Childhood Atopic Asthma

Data table header descriptions
ID_REF
VALUE	log2 normalized value

Data table
ID_REF	VALUE
A_23_P326296	5.54
A_24_P287941	4.65
A_24_P325046	4.34
A_23_P200404	8
A_19_P00800513	5.72
A_32_P98683	8.14
A_23_P137543	6.98
A_19_P00803040	4.34
A_23_P117852	6.49
A_24_P328231	5.47
A_24_P186124	6.56
A_23_P369983	8.09
A_23_P325676	5.52
A_24_P37441	5.28
A_23_P20980	8.55
A_23_P123265	6.32
A_23_P339687	5.91
A_23_P252981	6.01
A_23_P200829	7.45
A_23_P105144	4.53

Total number of rows: 20533

Table truncated, full table size 364 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM1589551_252800419830_2013-08-06_10-16_532_GE1_1105_Oct12_2_3.txt.gz	3.1 Mb	(ftp)(http)	TXT
Processed data included within Sample table