|
| Status |
Public on Dec 31, 2016 |
| Title |
Adenosarcoma patient 9 |
| Sample type |
genomic |
| |
|
| Source name |
Adenosarcoma patient 9
|
| Organism |
Homo sapiens |
| Characteristics |
disease: Adenosarcoma
gender: Female
age: 55
site: Uterus
Stage: IA
group: N5
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
QIAamp DNA FFPE Tissue Kit according to the manufacturer’s instructions
|
| Label |
Biotin
|
| Label protocol |
Affymetrix standard protocol
|
| |
|
| Hybridization protocol |
Affymetrix standard protocol
|
| Scan protocol |
The chips were scanned with the GeneChip® Scanner 3000 7G. Raw data were extracted from the scanned images using the Affymetrix GeneChip® Command Console (AGCC) version 3.2.
|
| Description |
Hybridized to Oncoscan FFPE Assay Kit
|
| Data processing |
The raw CEL files were imported into the Affymetrix Oncoscan Console Ver1.1 software using its default settings to generate the corresponding copy number values. Copy number analysis was performed by using the Nexus Express for Oncoscan 3 software provided by the Affymetrix company.
|
| |
|
| Submission date |
Mar 20, 2015 |
| Last update date |
Dec 31, 2016 |
| Contact name |
Tzu-Pin Lu |
| E-mail(s) |
tplu@ntu.edu.tw
|
| Organization name |
National Taiwan University, Taiwan
|
| Department |
Department of Public Health, Institute of Epidemiology and Preventive Medicine
|
| Street address |
No. 1, Sec. 4, Roosevelt Road
|
| City |
Taipei |
| ZIP/Postal code |
10617 |
| Country |
Taiwan |
| |
|
| Platform ID |
GPL18602 |
| Series (1) |
| GSE67107 |
Genomewide copy number profiles for Adenosarcoma patients in Taiwan |
|
