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Sample GSM181255 Query DataSets for GSM181255
Status Public on Apr 11, 2007
Title cy5:SHR control, biological rep 2r; cy3:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from untreated SHR rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 184+/-13 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed

Data table
ID_REF VALUE R G Rb Gb FLAGGED
1 -2.087757829 211.55 505.3667 64 51 1
2 -0.634528858 83.07547 104.434 64 52 1
3 -0.087580954 142.8246 117.2807 64 52 1
4 -0.318187562 155.7966 134.7458 65 52 1
5 -0.005771024 168.5 123.2833 64 52 1
6 -0.298244418 161.7541 136.918 64 52 1
7 -2.857342094 118.7679 457.9643 64 52 1
8 -0.051462261 197.1897 136.7759 63 52 1
9 -0.0868912 108.7321 104.0893 62 52 1
10 -0.303987678 307.1509 203.6415 64 52 1
11 -0.156749258 150.6111 123.8519 64 52 1
24 -0.186864322 117.4444 111.1667 63 52 1
25 -0.301710648 778.7037 438.2037 63 53 1
26 -0.307362996 115.5 116.625 62 53 1
27 0.049438934 315.9322 170.2373 63 53 1
28 -3.037765734 119.4655 536.431 62 53 1
29 0.201814383 745.6667 286.6316 63 53 1
30 -0.06036566 160.2034 124.0847 61 52 1
31 0.132311744 238.7193 140 62 53 1
32 -0.109597763 102.1833 103.8333 62 54 1

Total number of rows: 21544

Table truncated, full table size 914 Kbytes.




Supplementary file Size Download File type/resource
GSM181255.txt.gz 5.0 Mb (ftp)(http) TXT

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