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Sample GSM181256 Query DataSets for GSM181256
Status Public on Apr 11, 2007
Title cy3:SHR control, biological rep 2g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from untreated SHR rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 184+/-13 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 2.83578 128.5833 493.2667 65 59 0 -2.835776077
2 0.114172 100.2414 139.2241 66 59 0 -0.114171546
3 -0.0795734 114.2131 145.3607 66 60 0 0.079573396
4 0.302688 126.5085 173.1017 66 59 0 -0.302688384
5 0.246417 121.0784 166.2549 66 60 0 -0.246417134
6 -0.035293 198.8305 206.661 67 61 0 0.035292992
7 2.96713 120.2 479.7 67 62 0 -2.967130714
8 -0.102298 154.0351 172.4737 66 60 0 0.10229792
9 -0.199171 123.9492 148.6271 66 61 0 0.199170502
10 -0.243562 347.2321 273.0714 67 61 0 0.243561604
11 0.0362619 163.3636 186.6909 67 60 0 -0.036261935
24 -0.155516 116 145.6552 66 62 0 0.155516202
25 -0.288577 1025.644 612.4915 67 63 0 0.288577391
26 -0.0297006 142.1607 171.3036 66 63 0 0.029700629
27 -0.0376523 175.931 193.4828 67 63 0 0.037652305
28 3.44621 106.6786 529 65 63 0 -3.446214247
29 0.269939 426.5172 406.8621 67 63 0 -0.2699386
30 -0.0648811 158.1754 178.7719 67 62 0 0.064881076
31 -0.0316697 163.4194 184.3871 67 62 0 0.031669748
32 -0.112483 116.678 147.9492 66 62 0 0.112483061

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181256.txt.gz 5.0 Mb (ftp)(http) TXT

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