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Sample GSM181257 Query DataSets for GSM181257
Status Public on Apr 11, 2007
Title cy3:SHR control, biological rep 3g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from untreated SHR rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 184+/-13 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 3.64519 101.5893 557.6786 57 48 0 -3.645192472
2 0.551372 73.03509 104.1053 57 47 1 -0.551371879
3 0.112674 82.07692 102.8654 57 47 0 -0.112674045
4 0.518253 106.9655 143.5172 56 47 0 -0.51825288
5 0.532126 94.96154 130.0769 57 47 0 -0.532125651
6 0.184165 108.7547 130.3962 56 48 0 -0.184165191
7 4.33632 81.91228 570.4386 56 48 0 -4.336321265
8 -0.0997511 113.5741 121.4074 56 47 0 0.099751115
9 -0.0978327 85.65517 101.3966 57 48 0 0.097832655
10 -0.127729 318.0492 249.4918 57 47 0 0.127728735
11 0.201829 117.9474 138.1053 56 47 0 -0.201829412
24 0.137897 85.25455 105.6364 58 47 0 -0.137896733
25 -0.318374 970.8136 563.9153 56 48 0 0.31837388
26 0.263341 101.2182 125.1818 57 47 0 -0.263340613
27 0.0232335 176.2037 172.4444 57 48 0 -0.023233524
28 3.88615 102.6071 644.9464 57 47.5 0 -3.886145238
29 0.180818 459.4821 397 57 48 0 -0.180817613
30 0.41929 112.1034 143.7069 56 47 0 -0.41928951
31 0.189832 128.1053 146.1053 56 47 0 -0.189831861
32 0.34612 85.7193 114.4912 56 47 0 -0.346120131

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181257.txt.gz 5.0 Mb (ftp)(http) TXT

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