NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM181258 Query DataSets for GSM181258
Status Public on Apr 11, 2007
Title cy5:SHR control, biological rep 3r; cy3:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from untreated SHR rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 184+/-13 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed

Data table
ID_REF VALUE R G Rb Gb FLAGGED
1 -3.157788751 82.86667 625.1667 59 59 0
2 -0.539278139 69.70175 89.42105 58 59 1
3 -0.078883268 82.89474 87.50877 58 59 0
4 -0.333421554 97.35593 103.0847 58 59 0
5 0.065546491 102.6207 92.32759 58 60 0
6 -0.475052245 92.87719 106.8421 59 60 0
7 -3.597365385 72.46667 666.0333 59 61 0
8 -0.194944924 98.61404 100.4386 60 62 0
9 -0.38515761 73.36364 90.10909 60 62 0
10 -0.250728536 298.4655 194.0172 64 64 0
11 -0.181266368 104 102.6786 66 65 1
24 -0.196302396 74.73333 88.31667 58 62 0
25 -0.246174221 835.1333 462.3667 60 63 0
26 -0.379967036 85.73684 101.614 59 63 0
27 0.037478492 146.7258 108.9839 59 62 0
28 -3.399843298 83.48333 806.25 59.5 63 0
29 0.14009599 445.0877 189.7895 58 63 0
30 -0.383111407 92.56667 104.85 59 62 0
31 0.038646978 136.1774 104.6452 59 61 0
32 -0.209567341 80.2931 91.56897 58 61 0

Total number of rows: 21544

Table truncated, full table size 912 Kbytes.




Supplementary file Size Download File type/resource
GSM181258.txt.gz 5.0 Mb (ftp)(http) TXT

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap