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Sample GSM181260 Query DataSets for GSM181260
Status Public on Apr 11, 2007
Title cy3:SHR control, biological rep 4g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from untreated SHR rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 184+/-13 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 2.25985 102.2909 626.3091 63 61 0 -2.259849467
2 0.121405 81.14545 103.0182 63 61 0 -0.12140488
3 0.0695745 87.55932 110.8475 63 61 0 -0.069574522
4 0.185266 107.0339 144.0847 63 60 0 -0.185265698
5 0.239617 97.27119 135.7288 63 61 0 -0.239617454
6 -0.107897 112.377 129.7049 63 61 0 0.107897137
7 2.66218 85.68333 631 63 62 1 -2.662175597
8 -0.101188 118.8333 136.1 63 61 0 0.10118782
9 0.0895586 87.37931 109.5 65 62 0 -0.089558568
10 -0.199554 337.2419 267.9355 64 62 0 0.19955438
11 -0.060879 126.0714 146.6786 63 62 0 0.060878994
24 0.0596976 89.32203 114.9153 63 63 0 -0.059697552
25 -0.157566 967.9016 625.2787 64 63 0 0.157565945
26 0.0848009 99.90323 127.1774 65 62 0 -0.084800932
27 -0.0179537 129.3621 155.2414 63 64 0 0.017953667
28 2.74732 89.54545 735.4364 64 65 0 -2.747316219
29 0.345799 332.4531 415.1563 64 64 0 -0.345799149
30 0.179576 110 150.1228 64 64 0 -0.179576124
31 0.0957057 119.1167 152.6833 65 64 0 -0.095705662
32 0.244975 87.2807 119.9649 64 63 0 -0.244975359

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181260.txt.gz 5.0 Mb (ftp)(http) TXT

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