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Sample GSM181262 Query DataSets for GSM181262
Status Public on Apr 11, 2007
Title cy5:SHR control, biological rep 5r; cy3:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from untreated SHR rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 184+/-13 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed

Data table
ID_REF VALUE R G Rb Gb FLAGGED
1 -3.215925319 111.2742 605.5484 61 54 1
2 -0.368757864 73.07018 98.12281 61 54 1
3 0.11921575 95.9 101.85 59 54 1
4 -0.755793327 192.3214 206.0893 60 54 1
5 0.200679546 114.6557 106.5246 60 54 1
6 -0.211311853 110.6 120.8167 60 54 1
7 -3.703295662 85.22034 593.2373 60 56 1
8 0.334320259 146.4906 112.4717 60 55 1
9 0.033675833 85.64286 97.83929 61 54 1
10 -0.051399366 339.0862 193.9828 60 54 1
11 0.159362902 122.5185 110.1296 59 53 1
24 -0.047507205 81.45614 98.98246 60 55 1
25 -0.165724953 917.0517 423.8103 61 55 1
26 -0.182192575 94.81356 112.5593 59 55 1
27 0.266205628 140.5833 112.7333 59 54 1
28 -3.94483862 82.79032 674.4194 59 54 1
29 0.006383442 382.6909 202.1818 60 55 1
30 -0.172985272 100.2759 113.2241 61 54 1
31 0.126741716 115.7049 110.1475 61 55 1
32 -0.417811512 86.33333 114.6667 61 55.5 1

Total number of rows: 21544

Table truncated, full table size 913 Kbytes.




Supplementary file Size Download File type/resource
GSM181262.txt.gz 5.0 Mb (ftp)(http) TXT

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