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Sample GSM181263 Query DataSets for GSM181263
Status Public on Apr 11, 2007
Title cy3:SHR control, biological rep 6g; cy5:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from untreated SHR rat
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 184+/-13 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE -(log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed
INV_VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash

Data table
ID_REF VALUE R G Rb Gb FLAGGED INV_VALUE
1 3.27204 147.2692 635.8269 57 47 0 -3.272037305
2 0.25128 82.1129 119.6935 56 48 0 -0.251279733
3 -0.0220399 107.4407 128.5085 57 48 0 0.022039872
4 0.265776 123.2241 149.7931 58 47.5 0 -0.265775594
5 0.179422 109.807 138.0877 57 48 0 -0.179421659
6 0.0770895 129.05 146.3333 57 49 0 -0.077089487
7 4.13151 96.45763 608.9661 58 49 0 -4.131506958
8 -0.289271 150.2807 139.9825 57 49 0 0.289270703
9 -0.0692208 90.17857 116.5 57 49 0 0.069220769
10 -0.198659 348.2667 227.85 58 50 0 0.198658577
11 -0.0323463 132.614 144.6667 58 51 0 0.032346269
24 -0.16677 96.50909 117.1273 55 47 0 0.166770465
25 -0.398476 1070.814 458.9831 55 47 0 0.398475523
26 0.271459 106.8036 140.4107 55 47 0 -0.271459201
27 -0.0459861 207.2586 178.7759 55 48 0 0.045986123
28 4.29785 96.47368 686.8246 55 48 0 -4.297847582
29 0.00752317 566.1429 350.7143 56 48 0 -0.007523171
30 0.360677 117.6491 152.614 56 48 0 -0.360677127
31 -0.0848787 154.3333 152.1404 54 48 0 0.084878704
32 0.140655 81.91525 117.7966 54 48 0 -0.140654876

Total number of rows: 21544

Table truncated, full table size 1118 Kbytes.




Supplementary file Size Download File type/resource
GSM181263.txt.gz 5.0 Mb (ftp)(http) TXT

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