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Sample GSM181266 Query DataSets for GSM181266
Status Public on Apr 11, 2007
Title cy5:SHR treated w/ nifedipine, biological rep 1r; cy3:pool of 6 WKY control rats
Sample type RNA
 
Channel 1
Source name medial layer of thorassic and abdominal aorta from SHR rat treated w/ nifedipine
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 145+/-9 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy5
Label protocol fluorescent linear amplification kit from Agilent
 
Channel 2
Source name medial layer of thorassic and abdominal aorta from pool of 6 WKY control rats
Organism Rattus norvegicus
Characteristics mean systolic blood pressure = 107+/-8 mm HG
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit
Label Cy3
Label protocol fluorescent linear amplification kit from Agilent
 
 
Hybridization protocol 60 C for 17 hours
Scan protocol Agilent DNA Microarray scanner
Description na
Data processing images analyzed with Agilent Feature Extraction v7.1,
 
Submission date Apr 09, 2007
Last update date Apr 10, 2007
Contact name Lynn M Amon
E-mail(s) lynn.amon@cidresearch.org
Organization name Fred Hutchinson Cancer Research Center
Department Division of Public Health Sciences
Lab Computation Biology Program
Street address 1100 Fairview, M1-C108
City Seattle
State/province WA
ZIP/Postal code 98109-1024
Country USA
 
Platform ID GPL890
Series (1)
GSE7483 Microarray analysis of aortic tissue from different rat hypertensive models

Data table header descriptions
ID_REF Agilent Feature Extraction feature number
VALUE log2((R-Rb)/(G-Gb)) Loess normalized in LIMMA and scaled normalized across arrays excl SHR_wash
R rMeanSignal
G gMeanSignal
Rb rBGMedianSignal
Gb gBGMedianSignal
FLAGGED feature or background signal was nonuniform or outlier flagged and removed

Data table
ID_REF VALUE R G Rb Gb FLAGGED
1 -2.171904073 87.25806 609.9032 58 53 0
2 -0.206061327 70.56667 99.4 58 53 0
3 -0.0359424 78.80769 100.4423 57 52 0
4 -0.139325051 89.4127 115.9841 56 53 0
5 0.258381872 113.0333 106.4167 58 53 0
6 -0.189226283 92.4918 121.9672 57 54 0
7 -2.4842394 75.52632 593.4211 58 54 0
8 0.112526163 115.5167 117.5167 58 54 0
9 0.022130183 78.11667 97.61667 58 53 0
10 -0.29371303 145.0345 183.7759 59 53 0
11 0.020271612 85.47273 104.7091 57 54 0
24 -0.11058684 73.41667 101.9167 57 55 0
25 -0.430128949 259.7667 416.4333 58 54 0
26 -0.216091235 84.96667 116.1 58 54 0
27 0.11320474 112.4909 116.1273 59 55 0
28 -2.590369179 75.78689 674.4918 58 54 0
29 0.230411456 252.25 191.9286 57.5 54 0
30 -0.093003305 80.43103 106.431 57 54 0
31 0.180075186 111.3833 112 58 55 0
32 -0.043661016 78.54237 101.5763 57 53 0

Total number of rows: 21544

Table truncated, full table size 912 Kbytes.




Supplementary file Size Download File type/resource
GSM181266.txt.gz 5.0 Mb (ftp)(http) TXT

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